Jatropha Genome Database

JcCA0066621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066621.10 + phase: 2 /partial
         (58 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06520.1 | Symbols: PSBX | PSBX (photosystem II subunit X) | ...    71   1e-13

>AT2G06520.1 | Symbols: PSBX | PSBX (photosystem II subunit X) |
           chr2:2587868-2588218 REVERSE
          Length = 116

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 54/60 (90%), Gaps = 2/60 (3%)

Query: 1   LTAAALTASMVMPDVAEAAE--LSPSLKNFLLSIVAGGVVLTAIVGAVIGVANFDPVKRS 58
           ++AAALTASMV+P++AEAA   +SPSLKNFLLSI +GG+VLT I+G V+GV+NFDPVKR+
Sbjct: 57  ISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKRT 116