Jatropha Genome Database

JcCA0065831.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0065831.30 - phase: 1 /partial/short
         (32 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13440.1 | Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-P...    62   5e-11
AT1G13440.2 | Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-P...    62   6e-11
AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | GAPC1 (GLYCERALDEHY...    59   5e-10
AT1G79530.1 | Symbols: GAPCP-1 | GAPCP-1 (GLYCERALDEHYDE-3-PHOSP...    49   8e-07
AT1G16300.1 | Symbols: GAPCP-2 | GAPCP-2; NAD or NADH binding / ...    46   4e-06

>AT1G13440.1 | Symbols: GAPC-2, GAPC2 | GAPC2
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or
           NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:4608465-4610494 REVERSE
          Length = 338

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PE+IPWG+ GA+FVVESTGVFTDK+KAAAHLK
Sbjct: 86  PEDIPWGEAGADFVVESTGVFTDKDKAAAHLK 117


>AT1G13440.2 | Symbols: GAPC-2, GAPC2 | GAPC2
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or
           NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:4608465-4610494 REVERSE
          Length = 310

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PE+IPWG+ GA+FVVESTGVFTDK+KAAAHLK
Sbjct: 86  PEDIPWGEAGADFVVESTGVFTDKDKAAAHLK 117


>AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | GAPC1
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1);
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr3:1081077-1083131 FORWARD
          Length = 338

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 30/32 (93%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PE+IPW + GA++VVESTGVFTDK+KAAAHLK
Sbjct: 86  PEDIPWAEAGADYVVESTGVFTDKDKAAAHLK 117


>AT1G79530.1 | Symbols: GAPCP-1 | GAPCP-1
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1);
           NAD or NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:29916232-29919088 REVERSE
          Length = 422

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           P EIPW   GA++VVES+GVFT   KAA+HLK
Sbjct: 166 PSEIPWADLGADYVVESSGVFTTLSKAASHLK 197


>AT1G16300.1 | Symbols: GAPCP-2 | GAPCP-2; NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:5574433-5577406 FORWARD
          Length = 420

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           P EIPW   GAE+VVES+GVFT   +A++HLK
Sbjct: 164 PAEIPWADLGAEYVVESSGVFTTVGQASSHLK 195