Jatropha Genome Database

JcCA0065831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0065831.10 - phase: 1 /partial
         (152 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | GAPC1 (GLYCERALDEHY...   278   9e-76
AT1G13440.2 | Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-P...   276   3e-75
AT1G13440.1 | Symbols: GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-P...   276   4e-75
AT1G79530.1 | Symbols: GAPCP-1 | GAPCP-1 (GLYCERALDEHYDE-3-PHOSP...   249   5e-67
AT1G16300.1 | Symbols: GAPCP-2 | GAPCP-2; NAD or NADH binding / ...   246   3e-66
AT1G42970.1 | Symbols: GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE D...   124   3e-29
AT1G12900.2 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHA...   115   1e-26
AT1G12900.1 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHA...   114   3e-26
AT1G12900.3 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHA...   113   4e-26
AT3G26650.1 | Symbols: GAPA, GAPA-1 | GAPA (GLYCERALDEHYDE 3-PHO...   113   6e-26

>AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | GAPC1
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1);
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr3:1081077-1083131 FORWARD
          Length = 338

 Score =  278 bits (711), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 135/149 (90%), Positives = 145/149 (97%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDVSVV
Sbjct: 188 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVV 247

Query: 61  DLTVRLEKAATYEQIKAAIKEESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIAL 120
           DLTVRLEKAATY++IK AIKEESEGKLKGILGY E+D+VS+DF+GDNRSSIFDAKAGIAL
Sbjct: 248 DLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 307

Query: 121 NDKFVKLVSWYDNEVGYSTRVVDLICHMA 149
           +DKFVKLVSWYDNE GYS+RVVDLI HM+
Sbjct: 308 SDKFVKLVSWYDNEWGYSSRVVDLIVHMS 336


>AT1G13440.2 | Symbols: GAPC-2, GAPC2 | GAPC2
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or
           NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:4608465-4610494 REVERSE
          Length = 310

 Score =  276 bits (707), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/149 (89%), Positives = 145/149 (97%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTVDVSVV
Sbjct: 160 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVV 219

Query: 61  DLTVRLEKAATYEQIKAAIKEESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIAL 120
           DLTVRLEKAATY++IK AIKEESEGK+KGILGY E+D+VS+DF+GDNRSSIFDAKAGIAL
Sbjct: 220 DLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 279

Query: 121 NDKFVKLVSWYDNEVGYSTRVVDLICHMA 149
           +DKFVKLVSWYDNE GYS+RVVDLI HM+
Sbjct: 280 SDKFVKLVSWYDNEWGYSSRVVDLIVHMS 308


>AT1G13440.1 | Symbols: GAPC-2, GAPC2 | GAPC2
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or
           NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:4608465-4610494 REVERSE
          Length = 338

 Score =  276 bits (706), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/149 (89%), Positives = 145/149 (97%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTVDVSVV
Sbjct: 188 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVV 247

Query: 61  DLTVRLEKAATYEQIKAAIKEESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIAL 120
           DLTVRLEKAATY++IK AIKEESEGK+KGILGY E+D+VS+DF+GDNRSSIFDAKAGIAL
Sbjct: 248 DLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 307

Query: 121 NDKFVKLVSWYDNEVGYSTRVVDLICHMA 149
           +DKFVKLVSWYDNE GYS+RVVDLI HM+
Sbjct: 308 SDKFVKLVSWYDNEWGYSSRVVDLIVHMS 336


>AT1G79530.1 | Symbols: GAPCP-1 | GAPCP-1
           (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1);
           NAD or NADH binding / binding / catalytic/
           glyceraldehyde-3-phosphate dehydrogenase
           (phosphorylating)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:29916232-29919088 REVERSE
          Length = 422

 Score =  249 bits (636), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 131/149 (87%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVV
Sbjct: 268 TQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSNVSVV 327

Query: 61  DLTVRLEKAATYEQIKAAIKEESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIAL 120
           DLT RLEK A+YE +KAAIK  SEG LKGILGY +ED+VS+DF+GD+RSSIFDA AGI L
Sbjct: 328 DLTCRLEKGASYEDVKAAIKHASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDANAGIGL 387

Query: 121 NDKFVKLVSWYDNEVGYSTRVVDLICHMA 149
           +  FVKLVSWYDNE GYS RV+DLI HMA
Sbjct: 388 SKSFVKLVSWYDNEWGYSNRVLDLIEHMA 416


>AT1G16300.1 | Symbols: GAPCP-2 | GAPCP-2; NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:5574433-5577406 FORWARD
          Length = 420

 Score =  246 bits (629), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/149 (80%), Positives = 131/149 (87%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVV
Sbjct: 266 TQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 325

Query: 61  DLTVRLEKAATYEQIKAAIKEESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIAL 120
           DLT RLEK A+YE +KAAIK  SEG L+GILGY EED+VS+DF+GD+RSSIFDA AGI L
Sbjct: 326 DLTCRLEKDASYEDVKAAIKFASEGPLRGILGYTEEDVVSNDFLGDSRSSIFDANAGIGL 385

Query: 121 NDKFVKLVSWYDNEVGYSTRVVDLICHMA 149
           +  F+KLVSWYDNE GYS RV+DLI HMA
Sbjct: 386 SKSFMKLVSWYDNEWGYSNRVLDLIEHMA 414


>AT1G42970.1 | Symbols: GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE
           DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate
           dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate
           dehydrogenase | chr1:16127552-16129584 FORWARD
          Length = 447

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 1/130 (0%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAA-TYEQIKAAIK 80
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL + +EK   T E +  A +
Sbjct: 287 NIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFR 346

Query: 81  EESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIALNDKFVKLVSWYDNEVGYSTR 140
           + + G +KGIL   +  LVS DF   + S+  D+   + + D  VK+V+WYDNE GYS R
Sbjct: 347 KAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQR 406

Query: 141 VVDLICHMAS 150
           VVDL   +AS
Sbjct: 407 VVDLAHLVAS 416


>AT1G12900.2 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE
           DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:4392634-4393747 REVERSE
          Length = 317

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 86/123 (69%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYEQIKAAIKE 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++ K    E++ AA ++
Sbjct: 186 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 245

Query: 82  ESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIALNDKFVKLVSWYDNEVGYSTRV 141
            +E +LKGIL   +E LVS DF   + SS  D+   + + D  VK+++WYDNE GYS RV
Sbjct: 246 AAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 305

Query: 142 VDL 144
           VDL
Sbjct: 306 VDL 308


>AT1G12900.1 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE
           DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:4392634-4394283 REVERSE
          Length = 399

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 86/123 (69%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYEQIKAAIKE 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++ K    E++ AA ++
Sbjct: 268 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 327

Query: 82  ESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIALNDKFVKLVSWYDNEVGYSTRV 141
            +E +LKGIL   +E LVS DF   + SS  D+   + + D  VK+++WYDNE GYS RV
Sbjct: 328 AAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 387

Query: 142 VDL 144
           VDL
Sbjct: 388 VDL 390


>AT1G12900.3 | Symbols: GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE
           DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding /
           binding / catalytic/ glyceraldehyde-3-phosphate
           dehydrogenase (phosphorylating)/
           glyceraldehyde-3-phosphate dehydrogenase |
           chr1:4392634-4393850 REVERSE
          Length = 350

 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 86/123 (69%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYEQIKAAIKE 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++ K    E++ AA ++
Sbjct: 219 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 278

Query: 82  ESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIALNDKFVKLVSWYDNEVGYSTRV 141
            +E +LKGIL   +E LVS DF   + SS  D+   + + D  VK+++WYDNE GYS RV
Sbjct: 279 AAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 338

Query: 142 VDL 144
           VDL
Sbjct: 339 VDL 341


>AT3G26650.1 | Symbols: GAPA, GAPA-1 | GAPA (GLYCERALDEHYDE
           3-PHOSPHATE DEHYDROGENASE A SUBUNIT);
           glyceraldehyde-3-phosphate dehydrogenase/ protein
           binding | chr3:9795226-9796848 FORWARD
          Length = 396

 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 86/123 (69%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYEQIKAAIKE 81
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V++ K    E++ AA ++
Sbjct: 265 NIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 324

Query: 82  ESEGKLKGILGYVEEDLVSSDFIGDNRSSIFDAKAGIALNDKFVKLVSWYDNEVGYSTRV 141
            +E +LKGIL   +E LVS DF   + S+  D+   + + D  VK+++WYDNE GYS RV
Sbjct: 325 SAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRV 384

Query: 142 VDL 144
           VDL
Sbjct: 385 VDL 387