Jatropha Genome Database

JcCA0064141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0064141.10 - phase: 0 /pseudo/partial
         (261 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22940.1 | Symbols: TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING...   331   4e-91

>AT1G22940.1 | Symbols: TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING
           1); hydroxymethylpyrimidine kinase/
           phosphomethylpyrimidine kinase/ thiamin-phosphate
           diphosphorylase | chr1:8122384-8124908 FORWARD
          Length = 522

 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 200/257 (77%), Gaps = 21/257 (8%)

Query: 18  KIPHVLTVAGSDSGAGAGIQADLKTCAARGVFCSTVITAVTAQNTVGVQGVNIVPEDFVA 77
           K+P VLTVAGSDSGAGAGIQADLK CAARGV+C++VITAVTAQNT GVQ V+++P +F++
Sbjct: 29  KVPQVLTVAGSDSGAGAGIQADLKVCAARGVYCASVITAVTAQNTRGVQSVHLLPPEFIS 88

Query: 78  EQLKSVLSDMQVDVVKTGMLPSIGIVNILRQSLREFPVRG-------------SFGG*SC 124
           EQLKSVLSD + DVVKTGMLPS  IV +L Q+L +FPVR                 G S 
Sbjct: 89  EQLKSVLSDFEFDVVKTGMLPSTEIVEVLLQNLSDFPVRALVVDPVMVSTSGHVLAGSSI 148

Query: 125 HGIYKWRCASWSFHSFLFSADIITPNIKEASALLGGTPLKTVADMRSAAKLLHAIGPRNV 184
             I++ R         L  ADIITPN+KEASALL G  ++TVA+MRSAAK LH +GPR V
Sbjct: 149 LSIFRER--------LLPIADIITPNVKEASALLDGFRIETVAEMRSAAKSLHEMGPRFV 200

Query: 185 LVKGGDLPDSLDAVDIFFDGKNYHELRASRIKTRNTHGTGCTLASCIAAELAKGSPMLSA 244
           LVKGGDLPDS D+VD++FDGK +HELR+ RI TRNTHGTGCTLASCIAAELAKGS MLSA
Sbjct: 201 LVKGGDLPDSSDSVDVYFDGKEFHELRSPRIATRNTHGTGCTLASCIAAELAKGSSMLSA 260

Query: 245 VKIAKRYVETALEYSKD 261
           VK+AKR+V+ AL+YSKD
Sbjct: 261 VKVAKRFVDNALDYSKD 277