Jatropha Genome Database

JcCA0059791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059791.20 + phase: 0 
         (99 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02040.2 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTO...   116   2e-27
AT5G02040.1 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTO...   116   2e-27
AT5G05987.1 | Symbols: PRA1.A2 | PRA1.A2 (PRENYLATED RAB ACCEPTO...   114   1e-26
AT3G11397.1 | Symbols: PRA1.A3 | PRA1.A3 (PRENYLATED RAB ACCEPTO...   110   2e-25

>AT5G02040.2 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTOR
          1.A1) | chr5:401163-402471 FORWARD
          Length = 209

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 59/69 (85%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDWG VT +DL  ALREVDWS+PPRP  EFFSRFT+P+S PKW+SR KCNLYYYRTNYFI
Sbjct: 1  MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFI 60

Query: 61 VIVLALGVA 69
          +IV+ LG+ 
Sbjct: 61 MIVVILGLG 69


>AT5G02040.1 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTOR
          1.A1) | chr5:401163-402471 FORWARD
          Length = 209

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 59/69 (85%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDWG VT +DL  ALREVDWS+PPRP  EFFSRFT+P+S PKW+SR KCNLYYYRTNYFI
Sbjct: 1  MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFI 60

Query: 61 VIVLALGVA 69
          +IV+ LG+ 
Sbjct: 61 MIVVILGLG 69


>AT5G05987.1 | Symbols: PRA1.A2 | PRA1.A2 (PRENYLATED RAB ACCEPTOR
          1.A2) | chr5:1804881-1806559 FORWARD
          Length = 209

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 61/95 (64%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDW  V AED++ ALREV+WSTPPR   EFFSRF  PRS+ KW SR KCNLYYYRTNYFI
Sbjct: 1  MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFI 60

Query: 61 VIVLALGVACXXXXXXXXXXXXXXXXXXFLNDRYA 95
          +++  LG+A                   FLND +A
Sbjct: 61 LVIFVLGLALVTRPLALVGAALTALSIAFLNDSFA 95


>AT3G11397.1 | Symbols: PRA1.A3 | PRA1.A3 (PRENYLATED RAB ACCEPTOR
          1.A3) | chr3:3576173-3577765 FORWARD
          Length = 209

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 60/95 (63%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDW +V AED++ ALREV+WS  PR L EFFSRF  PRS+ KW SR KCNLYYYRTNYFI
Sbjct: 1  MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFI 60

Query: 61 VIVLALGVACXXXXXXXXXXXXXXXXXXFLNDRYA 95
          + V  LG+A                   FLND +A
Sbjct: 61 LFVFVLGLALITRPLAILGAALTALSLAFLNDSFA 95