Jatropha Genome Database

JcCA0059711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059711.10 - phase: 0 
         (66 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49620.1 | Symbols: KRP7, ICN6, ICK5 | ICK5; cyclin binding /...    47   3e-06

>AT1G49620.1 | Symbols: KRP7, ICN6, ICK5 | ICK5; cyclin binding /
           cyclin-dependent protein kinase inhibitor |
           chr1:18365692-18366559 REVERSE
          Length = 195

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/22 (77%), Positives = 18/22 (81%)

Query: 45  YNYDVAKDVPLEGRYQWVRLKP 66
           YNYD+  D PLEGRYQWV LKP
Sbjct: 174 YNYDIVNDTPLEGRYQWVSLKP 195