Jatropha Genome Database

JcCA0046261.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.60 + phase: 0 /TE/partial
         (1707 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...    85   4e-16
ATMG00750.1 | Symbols: ORF119 | hypothetical protein | chrM:2208...    68   4e-11

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
            chrM:235916-236392 FORWARD
          Length = 158

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 3/141 (2%)

Query: 1003 LTNLTKVLKRCIESNLVLNYEKCHFMVDQGLILGH--IVSSRGIEVDKAKIDVIKSLPYP 1060
            + +L  VL+   +     N +KC F   Q   LGH  I+S  G+  D AK++ +   P P
Sbjct: 1    MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 1061 ASVREIRSFLGHAGFYRRFIKDFSKIAQPLCKLLQKDVSFVFDEECRKAFDMLKEKLISA 1120
             +  E+R FLG  G+YRRF+K++ KI +PL +LL+K+ S  + E    AF  LK  + + 
Sbjct: 61   KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTL 119

Query: 1121 PIVQPSNWNYPFEIMCDASNY 1141
            P++   +   PF       N+
Sbjct: 120  PVLALPDLKLPFVTRVGKWNW 140


>ATMG00750.1 | Symbols: ORF119 | hypothetical protein |
            chrM:220830-221189 FORWARD
          Length = 119

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 1358 RKILECGLFWPSMFKDSYIYCKSCENCQKTGNLSRRDQMPLTSILICEIFYVWGIDFM 1415
            R +L+ G +WP+ FKD++ +  SC+ CQ+ GN ++R++MP   IL  E+F VWGI FM
Sbjct: 33   RFVLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90