Jatropha Genome Database

JcCA0046261.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.50 + phase: 2 /TE/partial
         (169 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    76   1e-14
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...    47   8e-06

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 57/107 (53%)

Query: 14  DSDWAGSLDDMKSTTGFCFSLGSAVICWGTRKQASVAQSTXXXXXXXXXXXXXXXIWLRK 73
           D+ +    D  +ST G+C  LG+++I W ++KQ  V++S+               +WL +
Sbjct: 447 DASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQ 506

Query: 74  VLVDLNFQQENPTKILCDNKSAVAMVKNPIFHGKTKHIKIKYHAIRE 120
              +L      PT + CDN +A+ +  N +FH +TKHI+   H++RE
Sbjct: 507 FFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 14  DSDWAGSLDDMKSTTGFCFSLGSAVICWGTRKQASVAQST 53
           DSDWAG     +STTGFC  LG  +I W  ++Q +V++S+
Sbjct: 169 DSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSS 208