Jatropha Genome Database

JcCA0046101.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046101.30 + phase: 0 /partial
         (219 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57660.1 | Symbols: NRPA1 | NRPA1; DNA binding / DNA-directed...   205   1e-53
AT5G60040.1 | Symbols: NRPC1 | NRPC1; DNA binding / DNA-directed...    79   3e-15
AT4G35800.1 | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, ...    57   8e-09

>AT3G57660.1 | Symbols: NRPA1 | NRPA1; DNA binding / DNA-directed
           RNA polymerase/ zinc ion binding |
           chr3:21353746-21362814 FORWARD
          Length = 1670

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/213 (48%), Positives = 142/213 (66%), Gaps = 4/213 (1%)

Query: 1   GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
           GA++ ++S+ FSF+T+++VRKHSF+K+T P L D V  P  GGLYD  LGP  +   C +
Sbjct: 22  GASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNS 81

Query: 61  CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
           CGQ    CPGHCGHI+LV P+Y+PLLFN L   LQR CF+C HF      V++ V QL+L
Sbjct: 82  CGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKL 141

Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
           I+KGDIV AK+L+S  P+++   + SD S ES  T  S  +C + + ++ + WTSLQF+E
Sbjct: 142 IIKGDIVSAKQLESNTPTKS---KSSDESCESVVTTDSSEECEDSD-VEDQRWTSLQFAE 197

Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGW 213
            T+VL  F+    K C  C  +NP + KPMFGW
Sbjct: 198 VTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGW 230


>AT5G60040.1 | Symbols: NRPC1 | NRPC1; DNA binding / DNA-directed
           RNA polymerase/ ribonucleoside binding / zinc ion
           binding | chr5:24173590-24183269 FORWARD
          Length = 1376

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 57/99 (57%)

Query: 6   IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
           I SI FS L+D EV K + V++ +  L D   +P   GL DP +GP ++ +IC TC    
Sbjct: 23  IKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGNF 82

Query: 66  TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHF 104
            NCPGH G++ L  PVYN   FNF+  +L+  C  C + 
Sbjct: 83  QNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM 121


>AT4G35800.1 | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS,
           RNA_POL_II_LS | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
           DNA binding / DNA-directed RNA polymerase |
           chr4:16961115-16967892 REVERSE
          Length = 1840

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 9   ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNC 68
           + F  L+ +E+R+ S + +      +   +P +GGL D  LG +     C+TC   +  C
Sbjct: 18  VQFGILSPDEIRQMSVIHVEHSETTE-KGKPKVGGLSDTRLGTIDRKVKCETCMANMAEC 76

Query: 69  PGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
           PGH G+++L  P+Y+      +  +++  CF C
Sbjct: 77  PGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNC 109