Jatropha Genome Database

JcCA0046021.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046021.30 - phase: 0 /partial
         (59 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63190.1 | Symbols: RRF | RRF (RIBOSOME RECYCLING FACTOR, CHL...    66   5e-12

>AT3G63190.1 | Symbols: RRF | RRF (RIBOSOME RECYCLING FACTOR,
           CHLOROPLAST PRECURSOR) | chr3:23342861-23344640 REVERSE
          Length = 275

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 37/55 (67%)

Query: 1   VALRNIRRDXXXXXXXXXXXXXXSEDNVKDLSSDFQKLTDEYMKKIDTIYKQKEK 55
           VALRNIRRD              SEDNVKDLSSD QKL D YMKKI+ +YKQKEK
Sbjct: 216 VALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEK 270