Jatropha Genome Database

JcCA0046021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046021.20 + phase: 0 
         (255 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63170.1 | Symbols:  | chalcone isomerase | chr3:23334675-233...   223   7e-59
AT2G26310.1 | Symbols:  | chalcone isomerase | chr2:11201770-112...   100   7e-22

>AT3G63170.1 | Symbols:  | chalcone isomerase |
           chr3:23334675-23335993 FORWARD
          Length = 279

 Score =  223 bits (569), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 135/290 (46%), Positives = 167/290 (57%), Gaps = 53/290 (18%)

Query: 1   MVSLRFPFLFSQPIRPSVISYATTSRSXXXXXXXXXXXXXXXXXXXXXXXI-QNPTNTRD 59
           MVS RFPF FSQP R      ATTS S                         +NP+    
Sbjct: 1   MVSFRFPFSFSQPPR------ATTSFSGFSISAVAVSVTVGAAAAGAAIAASRNPS---- 50

Query: 60  SFLQTALNFLLPNH-SSL-PWGSLSLADASPALVESKTG--------------------- 96
                 L +   +H SSL PWGS++LAD S  +VE KTG                     
Sbjct: 51  ---HPILEWAFSSHRSSLSPWGSITLADES--VVEPKTGFSFPASIGDSRRLLGVGLRKK 105

Query: 97  --------------VYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQ 142
                         VYAD D VK ++G+KY  L  SE++ NK F +DLME DI +T+RLQ
Sbjct: 106 SLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQ 165

Query: 143 IVYSRLSIRSVRSAFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREK 202
           IVY +L+IRSVR+AF+ESVG+RL+KFGG DN ELLQ FTS FKDEYKIPR S I+L+++ 
Sbjct: 166 IVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDP 225

Query: 203 GHVLRTTIDGKEAGSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASL 252
           GHVL   I+G   GSV+S +LCRSILDLYIGE+PFD+ A+E+     ASL
Sbjct: 226 GHVLSVAIEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASL 275


>AT2G26310.1 | Symbols:  | chalcone isomerase |
           chr2:11201770-11203919 FORWARD
          Length = 398

 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 86/159 (54%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           G Y     V   LG KY  +  S+L +  +  +DL+  DI ++VRL + Y+ L I +VR 
Sbjct: 238 GFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVRLVVNYNGLKINTVRD 297

Query: 156 AFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKEA 215
            FE+S+ +RL K     +   L  F S F+ +  IP G++I+  R +   L T I G   
Sbjct: 298 VFEKSLRARLVKANPKTDFNCLNDFGSFFRQDIPIPAGTIIDFRRTEDGQLITEIGGNLI 357

Query: 216 GSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLLQ 254
           G+V+SK LCR+   +YIG+ P   Q KE I  K+  +++
Sbjct: 358 GAVRSKDLCRAFFGMYIGDVPVSEQTKEEIGRKVVGIIK 396