Jatropha Genome Database

JcCA0045831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.20 + phase: 1 /TE/partial
         (63 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H ...    57   3e-09

>AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H |
           chr5:17201414-17202323 REVERSE
          Length = 258

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 36/62 (58%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
           S GGV R+ EG W  G  +NIG C+A  AE WGVY GL  AW       EL++D + +V 
Sbjct: 164 SAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVG 223

Query: 62  VL 63
            L
Sbjct: 224 FL 225