Jatropha Genome Database

JcCA0045571.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045571.20 + phase: 0 /TE
         (1346 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   140   6e-33
ATMG00300.1 | Symbols: ORF145A | hypothetical protein | chrM:896...    73   1e-12
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    70   1e-11
ATMG00710.1 | Symbols: ORF120 | hypothetical protein | chrM:2075...    66   1e-10
AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    55   4e-07

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  140 bits (353), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 107/182 (58%), Gaps = 8/182 (4%)

Query: 809 VLMTDGGEPECFEEAMENEHKRNXIEAMQDEMKSLHENKTFEXXXXXXXXXXXXXXWVFR 868
           V +    EP  + EA E         AM DE+ ++    T+E              WV++
Sbjct: 78  VCIAKAKEPSTYNEAKEFLVW---CGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134

Query: 869 IKQEEHSSQPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLRMAASFNLEIEQMD 928
           IK     +  R+KARLV KG+ Q++GIDF E FSPV K+TS++ +L ++A +N  + Q+D
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194

Query: 929 VKTAFLHSDLEEEIYMEQPEGFIKKGKE----NYVCKLRKSLYGLKQAPRQWYXKFE-SI 983
           +  AFL+ DL+EEIYM+ P G+  +  +    N VC L+KS+YGLKQA RQW+ KF  ++
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTL 254

Query: 984 IG 985
           IG
Sbjct: 255 IG 256


>ATMG00300.1 | Symbols: ORF145A | hypothetical protein |
           chrM:89617-90054 REVERSE
          Length = 145

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 375 ENFCSTFRKGQWKLTKGSMVIANGRKDPKLYVMHAKLSLDAFNVA-NDNSAVELWHKRLG 433
           E  CS   +G  K+ KG   I  G +   LY++   +     N+A        LWH RL 
Sbjct: 21  EASCS---EGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLA 77

Query: 434 HMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMAGKHNRVAFKISXPSRMKNVLDLVHSDLC 493
           HMS++GM  LVK   L       L+ C DC+ GK +RV F        KN LD VHSDL 
Sbjct: 78  HMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTG-QHTTKNPLDYVHSDLW 136

Query: 494 G 494
           G
Sbjct: 137 G 137


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 834 EAMQDEMKSLHENKTFEXXXXXXXXXXXXXXWVFRIKQEEHSSQPRFKARLVVKGFNQRK 893
           +AMQ+E+ +L  NKT+               WVF+ K     +  R KARLV KGF+Q +
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 894 GIDFDEIFSPVVKMTSIRTVLRMAASFNLEIEQ 926
           GI F E +SPVV+  +IRT+L +A    LE+ Q
Sbjct: 102 GIYFVETYSPVVRTATIRTILNVAQ--QLEVGQ 132


>ATMG00710.1 | Symbols: ORF120 | hypothetical protein |
           chrM:207553-207915 REVERSE
          Length = 120

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 590 MNRTLMERVRCLLSHAKLSKRFWGEALLTAVHLINRSLCVPLQYDTPERVWSGKDVSYDH 649
           MNRT++E+VR +L    L K F  +A  TAVH+IN+     + +  P+ VW     +Y +
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 650 LRVFGCKAFVH 660
           LR FGC A++H
Sbjct: 61  LRRFGCVAYIH 71


>AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr4:422732-424580 REVERSE
          Length = 488

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 28/284 (9%)

Query: 7   KMISLNGANYHIWRNKMRDLLMVTKMHL------PVFGSSK-PE---------DKTDEEW 50
           K+   +G +Y  W ++M   L   K+        P  GSS+ PE         D T ++W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253

Query: 51  AFEHEQVCGYIXQFVDDNVYNHICNE-THARTLWDKLEELYASKSGNNQLFYLTKLMNFK 109
             +      ++   + D++Y     +  HA+ LWD+L+ +Y      ++   + K + F+
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313

Query: 110 YQKGTSVADHLSEMQVTIHQLSNMGIKFDDKILGLMVFASLPESWETLKISITNST--PH 167
             +   + + +         + + G+  D+      + +  P SW      +      P 
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLP- 372

Query: 168 SGVSLEFVK--NAVLNEEMRRKTQNPSSSQSDILLADAKRNNHPRGRSQSRSSNTRDKSR 225
             + +E VK    +L    +  T  P++  S +    +    H RG SQS     ++  R
Sbjct: 373 VWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTH-RG-SQSVGWKRKEPER 430

Query: 226 GRSNKFANIVCHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESS 269
              ++   IVC +CG+KGH+ ++C   KSD E+  GK+ +  SS
Sbjct: 431 ---DERVIIVCDNCGRKGHLAKHCWGSKSD-ERASGKSNRINSS 470