Jatropha Genome Database
- JcCA0045271.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0045271.30 - phase: 0 /partial
(122 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03300.2 | Symbols: DCL2 | DCL2 (DICER-LIKE 2); ATP binding /... 133 2e-32
AT3G03300.1 | Symbols: DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP b... 133 3e-32
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60... 80 2e-16
AT3G43920.3 | Symbols: DCL3, ATDCL3 | ribonuclease III family pr... 69 9e-13
AT3G43920.2 | Symbols: DCL3, ATDCL3 | ribonuclease III family pr... 69 9e-13
AT3G43920.1 | Symbols: DCL3, ATDCL3 | ribonuclease III family pr... 69 1e-12
AT4G15417.1 | Symbols: ATRTL1 | ATRTL1 (ARABIDOPSIS THALIANA RNA... 68 1e-12
AT5G20320.1 | Symbols: DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA b... 64 1e-11
AT3G20420.1 | Symbols: RTL2, ATRTL2 | RTL2 (RNASE THREE-LIKE PRO... 59 6e-10
>AT3G03300.2 | Symbols: DCL2 | DCL2 (DICER-LIKE 2); ATP binding /
ATP-dependent helicase/ RNA binding / double-stranded RNA
binding / helicase/ nucleic acid binding / ribonuclease
III | chr3:768020-774525 REVERSE
Length = 1374
Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 84/113 (74%), Gaps = 5/113 (4%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
VLGDVIESLAGAI+VDSGYNKE VF SI+PLL +ITPET++LHPVREL ELCQK FE
Sbjct: 1265 VLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFEL 1324
Query: 61 SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTI 113
SK+ S T EV A F HT++A+DKK AK++A KEVL LK+++
Sbjct: 1325 SKA-----KDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNSL 1372
>AT3G03300.1 | Symbols: DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP
binding / ATP-dependent helicase/ RNA binding /
double-stranded RNA binding / helicase/ nucleic acid
binding / ribonuclease III | chr3:768020-774833 REVERSE
Length = 1388
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 84/113 (74%), Gaps = 5/113 (4%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
VLGDVIESLAGAI+VDSGYNKE VF SI+PLL +ITPET++LHPVREL ELCQK FE
Sbjct: 1279 VLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFEL 1338
Query: 61 SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTI 113
SK+ S T EV A F HT++A+DKK AK++A KEVL LK+++
Sbjct: 1339 SKA-----KDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNSL 1386
>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/
double-stranded RNA binding / protein binding /
ribonuclease III | chr1:23519-31079 FORWARD
Length = 1909
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 46/55 (83%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQK 55
VLGD++ES+AGAI++DSG + A ++ +PLL+P++TPET+ +HPVREL E CQ+
Sbjct: 1690 VLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQ 1744
>AT3G43920.3 | Symbols: DCL3, ATDCL3 | ribonuclease III family protein
| chr3:15753548-15760830 FORWARD
Length = 1580
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 2 LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELC 53
LGDV+ES+AGA+ +D+ + + V+R PLL PL+TP+ ++L P RELNELC
Sbjct: 1324 LGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1375
>AT3G43920.2 | Symbols: DCL3, ATDCL3 | ribonuclease III family protein
| chr3:15753548-15760830 FORWARD
Length = 1577
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 2 LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELC 53
LGDV+ES+AGA+ +D+ + + V+R PLL PL+TP+ ++L P RELNELC
Sbjct: 1321 LGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1372
>AT3G43920.1 | Symbols: DCL3, ATDCL3 | ribonuclease III family protein
| chr3:15753548-15760830 FORWARD
Length = 1531
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 2 LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELC 53
LGDV+ES+AGA+ +D+ + + V+R PLL PL+TP+ ++L P RELNELC
Sbjct: 1275 LGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1326
>AT4G15417.1 | Symbols: ATRTL1 | ATRTL1 (ARABIDOPSIS THALIANA
RNASEIII-LIKE 1); RNA binding / ribonuclease III |
chr4:8821759-8822991 FORWARD
Length = 264
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
VL D++ES GAI++D + E V++ I+PLLEP+I + ++ HP+ ELNE+CQK N +
Sbjct: 154 VLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQKRNLKL 212
Query: 61 SKSVVQRKNGMYS--VTEEVVAHGEIFKHTSEAADKKTAKRVASKEVL 106
+ +N Y + ++ V G K+TA+ A+K +
Sbjct: 213 TSKDTWEENQTYCFHIEDKFVGCGH------HPVKKETARNFAAKNAI 254
>AT5G20320.1 | Symbols: DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA
binding / protein binding / ribonuclease III |
chr5:6859571-6869068 REVERSE
Length = 1702
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
VLGD++ES GA+++D G+N V+ + L+P+ +++ P++EL ELCQ +++
Sbjct: 1419 VLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDR 1478
Query: 61 SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALK 110
S +K+G ++V +V +G ++ +K+ + A++ ++ LK
Sbjct: 1479 EISAT-KKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLK 1527
>AT3G20420.1 | Symbols: RTL2, ATRTL2 | RTL2 (RNASE THREE-LIKE
PROTEIN 2); double-stranded RNA binding / ribonuclease
III | chr3:7119371-7120895 REVERSE
Length = 391
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 16/120 (13%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETI--RLHPVRELNELCQKNNF 58
VL D+ ESLAGA+YVD ++ + ++ R LLEP++T + + + PV L +LC K+
Sbjct: 186 VLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHKH-- 243
Query: 59 EKSKSVVQRKNGMYSVT-----EEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTI 113
+K + K+G S+ +E++A G A +K A+ +A+KE LR L +
Sbjct: 244 KKRIDIKNWKDGNVSIAVIYLDDELLASG-------RAENKDIARLIAAKEALRKLSEVF 296