Jatropha Genome Database
- JcCA0045271.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0045271.20 - phase: 0
(379 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36170.2 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL... 634 0.0
AT5G36170.1 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL... 634 0.0
AT5G36170.3 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL... 461 e-130
AT1G56350.1 | Symbols: | peptide chain release factor, putative... 255 3e-68
AT3G57190.1 | Symbols: | peptide chain release factor, putative... 218 4e-57
AT3G62910.1 | Symbols: APG3 | APG3 (ALBINO AND PALE GREEN); tran... 159 2e-39
AT2G47020.1 | Symbols: | peptide chain release factor, putative... 132 3e-31
AT2G47020.2 | Symbols: | peptide chain release factor, putative... 103 1e-22
AT1G33330.1 | Symbols: | peptide chain release factor, putative... 57 2e-08
>AT5G36170.2 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL
FLUORESCENT 109); translation release factor/
translation release factor, codon specific |
chr5:14236083-14237974 REVERSE
Length = 455
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/379 (79%), Positives = 338/379 (89%)
Query: 1 MQDFYSLRRDVEAASERVEEIIASXXXXXXXXXXXXXXXXXXDSSLWDDRARAQEILSAL 60
MQDFY+LR+DVE AS RVEEI AS D+S WDDR +AQE LS+L
Sbjct: 77 MQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSL 136
Query: 61 TDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQL 120
D+KD+++LL+EFKTMVEDAETIVKLTEEMDSTD LLEEA I+KELNKSLD+FELTQL
Sbjct: 137 NDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQL 196
Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKS 180
LSGPYDKEGAV+ ITAGAGGTDAQDWADMLLRMY+RWGEKQRYKT+VVE S GEEAGIKS
Sbjct: 197 LSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKS 256
Query: 181 VTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 240
T+EIEGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQTSFSGVEVMPLLPEE++ +EIPEE
Sbjct: 257 ATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEE 316
Query: 241 DLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
DL+I+F+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKL+V
Sbjct: 317 DLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLMV 376
Query: 301 IAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGELEPF 360
IA EQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDG+L+PF
Sbjct: 377 IAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPF 436
Query: 361 IKAYLKYKYSMAMSASGSN 379
IKAYLK+KY++AM+++ +N
Sbjct: 437 IKAYLKHKYTLAMASAVTN 455
>AT5G36170.1 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL
FLUORESCENT 109); translation release factor/
translation release factor, codon specific |
chr5:14236083-14237974 REVERSE
Length = 456
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/379 (79%), Positives = 338/379 (89%)
Query: 1 MQDFYSLRRDVEAASERVEEIIASXXXXXXXXXXXXXXXXXXDSSLWDDRARAQEILSAL 60
MQDFY+LR+DVE AS RVEEI AS D+S WDDR +AQE LS+L
Sbjct: 78 MQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSL 137
Query: 61 TDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQL 120
D+KD+++LL+EFKTMVEDAETIVKLTEEMDSTD LLEEA I+KELNKSLD+FELTQL
Sbjct: 138 NDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQL 197
Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKS 180
LSGPYDKEGAV+ ITAGAGGTDAQDWADMLLRMY+RWGEKQRYKT+VVE S GEEAGIKS
Sbjct: 198 LSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKS 257
Query: 181 VTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 240
T+EIEGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQTSFSGVEVMPLLPEE++ +EIPEE
Sbjct: 258 ATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEE 317
Query: 241 DLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
DL+I+F+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKL+V
Sbjct: 318 DLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLMV 377
Query: 301 IAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGELEPF 360
IA EQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDG+L+PF
Sbjct: 378 IAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPF 437
Query: 361 IKAYLKYKYSMAMSASGSN 379
IKAYLK+KY++AM+++ +N
Sbjct: 438 IKAYLKHKYTLAMASAVTN 456
>AT5G36170.3 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL
FLUORESCENT 109); translation release factor/
translation release factor, codon specific |
chr5:14236297-14237974 REVERSE
Length = 391
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 219/279 (78%), Positives = 244/279 (87%)
Query: 1 MQDFYSLRRDVEAASERVEEIIASXXXXXXXXXXXXXXXXXXDSSLWDDRARAQEILSAL 60
MQDFY+LR+DVE AS RVEEI AS D+S WDDR +AQE LS+L
Sbjct: 78 MQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSL 137
Query: 61 TDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQL 120
D+KD+++LL+EFKTMVEDAETIVKLTEEMDSTD LLEEA I+KELNKSLD+FELTQL
Sbjct: 138 NDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQL 197
Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKS 180
LSGPYDKEGAV+ ITAGAGGTDAQDWADMLLRMY+RWGEKQRYKT+VVE S GEEAGIKS
Sbjct: 198 LSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKS 257
Query: 181 VTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 240
T+EIEGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQTSFSGVEVMPLLPEE++ +EIPEE
Sbjct: 258 ATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEE 317
Query: 241 DLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTE 279
DL+I+F+RAGGKGGQNVNKVETAVRITHIPTGV VRCT+
Sbjct: 318 DLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTD 356
>AT1G56350.1 | Symbols: | peptide chain release factor, putative |
chr1:21094840-21097826 FORWARD
Length = 482
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 196/322 (60%), Gaps = 2/322 (0%)
Query: 44 SSLWDDRARAQEILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATA 103
S LWDD A +I + K+K + F+ + + ++KL +E D+ L E
Sbjct: 152 SDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKE--ENDSELESETLK 209
Query: 104 IVKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRY 163
+ ++ + EL LLS D I + AGAGGT++ DWA M++ MY W +++++
Sbjct: 210 ALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKF 269
Query: 164 KTRVVEKSPGEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVE 223
VV+++PGE AGIK TI++ G YAYGY E G HR+VR SPF++ R TSF+ V
Sbjct: 270 SVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVA 329
Query: 224 VMPLLPEESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQ 283
V+P+L + S VEI + DL I R+GG GGQ+ N ++AVRI HIPTG+T C ERSQ
Sbjct: 330 VIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQ 389
Query: 284 LANKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG 343
+NK A++ L+++L + + ++ + Q + WG QIR YV HPY++VKD+RT
Sbjct: 390 HSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISWGNQIRTYVLHPYRMVKDLRTN 449
Query: 344 FETSDINSVMDGELEPFIKAYL 365
+E SD +SV++G+L+ FI ++L
Sbjct: 450 YEVSDPDSVLEGDLDGFILSFL 471
>AT3G57190.1 | Symbols: | peptide chain release factor, putative |
chr3:21166468-21168198 FORWARD
Length = 406
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 195/328 (59%), Gaps = 14/328 (4%)
Query: 46 LWDDRARAQEILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIV 105
LWDD A++ EIL L D + L + K E+A+ I++L E MD+ D L E+A
Sbjct: 88 LWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGE-MDAIDYSLFEQAYDSS 146
Query: 106 KELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKT 165
++++SL +E+++LL YD EGA + I +G+ G +Q W + ++ MY++W E+
Sbjct: 147 LDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERLGQNA 206
Query: 166 RVVEKSP--GEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVE 223
RV EK ++G+ S TIE E +AYGYL GE+G HR++ S N + + V+
Sbjct: 207 RVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLIISSTSN-----EECSATVD 261
Query: 224 VMPLLPEESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQ 283
++PL S D E+ E DL +++ ++ E V I HIP+GVT++ + ER++
Sbjct: 262 IIPLFLRASPDFEVKEGDLIVSYP-----AKEDHKIAENMVCIHHIPSGVTLQSSGERNR 316
Query: 284 LANKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG 343
AN+IKAL+RLKAKLLVIA EQ+ S++ +I + E ++ R+YV +K+V D +TG
Sbjct: 317 FANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNI-LEPREETRSYVSKGHKMVVDRKTG 375
Query: 344 FETSDINSVMDGELEPFIKAYLKYKYSM 371
E D+ SV+DG + P + A++ + S+
Sbjct: 376 LEILDLKSVLDGNIGPLLGAHISMRRSI 403
>AT3G62910.1 | Symbols: APG3 | APG3 (ALBINO AND PALE GREEN);
translation release factor/ translation release factor,
codon specific | chr3:23257661-23260386 REVERSE
Length = 422
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 12/310 (3%)
Query: 55 EILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDR 114
E+++ KD K L E K + ++A + E + S E ++ KE+ + +
Sbjct: 99 EVVTVFRRFKDCEKQLLESKVLAKEAGDDEDMAEMIGS-------EINSLTKEIEELEKQ 151
Query: 115 FELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGE 174
++ L S P D ++ + AG GG +A W L+RMY R+ E+ +K +V S E
Sbjct: 152 LKVLLLPSDPLDARNILLEVRAGTGGDEAAIWTGDLVRMYQRYSERSSWKFSMVSCSEAE 211
Query: 175 EAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMD 234
G K+ +EI+G Y L E G HR+ R +G TS + V +MP E ++
Sbjct: 212 HGGYKTCVMEIKGNRVYSKLKYESGVHRVQRVPQTETQGRVHTSTATVAIMPEADE--VE 269
Query: 235 VEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRL 294
V I +D+E+T +R+GG GGQNVNKVETA+ + H P+G+ + CTEER+Q+ NK +A L
Sbjct: 270 VVIDPKDIELTSARSGGAGGQNVNKVETAIDLFHKPSGIRIFCTEERTQIRNKARAFQLL 329
Query: 295 KAKLLVIAVEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVM 353
+AKL I V ++ +I+ R V ++IR Y + + V D R + + + +
Sbjct: 330 RAKLYEIKVREQQEKIRNERKSQVGTGARSEKIRTYNYKDSR-VTDHRLKMNFA-LTTFL 387
Query: 354 DGELEPFIKA 363
DG LE ++A
Sbjct: 388 DGALEDAVQA 397
>AT2G47020.1 | Symbols: | peptide chain release factor, putative |
chr2:19320090-19322279 REVERSE
Length = 413
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 125/242 (51%), Gaps = 5/242 (2%)
Query: 126 DKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKSVTIEI 185
D+ ++ + AG GG +A +A + RMY R+ +K+ +K +V+ + + G K + I
Sbjct: 160 DERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAI 219
Query: 186 EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEIT 245
G YG L E G HR+ R G TS V ++P E +DV++ EDL I
Sbjct: 220 CGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADE--VDVQLRNEDLRID 277
Query: 246 FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAVEQ 305
R+GG GGQ+ N +AVRI H+PTG+ V +ERSQ N+ KAL L A+L I +
Sbjct: 278 TYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLR 337
Query: 306 RASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGE-LEPFIKA 363
S ++R D + + +IR Y F P V D R G I +M GE L+ FI A
Sbjct: 338 IQSSRSKLRSDQIGSGDRSGRIRTYNF-PQGRVTDHRVGITHHAIEDMMQGENLDMFIDA 396
Query: 364 YL 365
L
Sbjct: 397 LL 398
>AT2G47020.2 | Symbols: | peptide chain release factor, putative |
chr2:19320439-19322002 REVERSE
Length = 256
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 126 DKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKSVTIEI 185
D+ ++ + AG GG +A +A + RMY R+ +K+ +K +V+ + + G K + I
Sbjct: 95 DERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAI 154
Query: 186 EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEIT 245
G YG L E G HR+ R G TS V ++P E +DV++ EDL I
Sbjct: 155 CGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADE--VDVQLRNEDLRID 212
Query: 246 FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQ 283
R+GG GGQ+ N +AVRI H+PTG+ V +ERSQ
Sbjct: 213 TYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQ 250
>AT1G33330.1 | Symbols: | peptide chain release factor, putative |
chr1:12084968-12086238 FORWARD
Length = 257
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 245 TFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAVE 304
TF R G GGQ+ NK ++AVR+ H+PTG+ + E+RSQ N+ AL+RL+ LL I V
Sbjct: 102 TF-RVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRASALNRLRT-LLAIKVR 159
Query: 305 QR 306
+
Sbjct: 160 NK 161