Jatropha Genome Database

JcCA0045131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045131.20 + phase: 0 /partial
         (111 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11600.1 | Symbols:  | unknown protein | chr5:3733815-3735015...    77   2e-15
AT1G19990.1 | Symbols:  | unknown protein | chr1:6935327-6936665...    60   3e-10

>AT5G11600.1 | Symbols:  | unknown protein | chr5:3733815-3735015
           REVERSE
          Length = 242

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           YSL GQK+DPPEEREPLRIFYESLSKQIP SEMAEF
Sbjct: 122 YSLAGQKFDPPEEREPLRIFYESLSKQIPGSEMAEF 157


>AT1G19990.1 | Symbols:  | unknown protein | chr1:6935327-6936665
           FORWARD
          Length = 251

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           Y LPGQK + P+ER+PLRIFYESL KQIP+S+MA+ 
Sbjct: 115 YDLPGQKREQPDERDPLRIFYESLYKQIPTSDMAQI 150