Jatropha Genome Database

JcCA0044231.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0044231.30 - phase: 0 /TE/partial
         (1012 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   100   7e-21
AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymer...    61   4e-09

>AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           RNA-directed DNA polymerase (reverse transcriptase),
           related (InterPro:IPR015706),
           Endonuclease/exonuclease/phosphatase
           (InterPro:IPR005135); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G40390.1); Has 2614
           Blast hits to 2551 proteins in 44 species: Archae - 0;
           Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086;
           Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
           | chr1:16528880-16531065 REVERSE
          Length = 626

 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 458 EIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVKH 517
           E +++QKS +KWL+DGD+NT+FFH  +  ++    I  ++  D V +     + E  V +
Sbjct: 432 ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAY 491

Query: 518 FSSLF--QGEVMQQDCSQIIEYL-PSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGP 574
           ++ L     +++  D  Q I+ + P          L A+ +D EI  AV+ +  + APGP
Sbjct: 492 YTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGP 551

Query: 575 DGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPI- 633
           D F   F+ + W +++    + VKEFF    + + F+   I LIPKV        FRP+ 
Sbjct: 552 DSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVS 611

Query: 634 -CLTNFKVCT 642
            C   +K+ T
Sbjct: 612 CCTVVYKIIT 621


>AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymerase
           | chr4:11045912-11047716 FORWARD
          Length = 376

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 645 LANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGRKARENN-IAIKLDIAKAF 703
           +  R+ PL+  LI P QASF+ GR     I+   E +H + RK      + +KLD+ KA+
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 704 DRVSWSFLEAVLFRFGFSQ 722
           DR+ W +LE  L   GF +
Sbjct: 61  DRIRWDYLEDTLISAGFPE 79