Jatropha Genome Database

JcCA0044211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0044211.20 - phase: 0 /pseudo/partial
         (99 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80460.1 | Symbols: NHO1, GLI1 | NHO1 (nonhost resistance to ...    96   4e-21
AT1G80460.2 | Symbols: NHO1, GLI1 | NHO1 (nonhost resistance to ...    71   1e-13

>AT1G80460.1 | Symbols: NHO1, GLI1 | NHO1 (nonhost resistance to P.
           s. phaseolicola 1); carbohydrate kinase/ glycerol kinase
           | chr1:30246960-30249055 REVERSE
          Length = 522

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 56/83 (67%)

Query: 17  LQADLLGNAVVRPADIETTXXXXXXXXXXXIGVWKEEEIFATGEKVKTATTFHPNLHEQQ 76
           +QADL+G+ VVRP DIETT           +G WKE +IF +GEK K +  F P + E  
Sbjct: 440 IQADLMGSPVVRPVDIETTALGAAYAAGLAVGFWKEADIFESGEKAKNSKVFRPAMEEGI 499

Query: 77  RKKKVESWCKAVEKSFGLADLSI 99
           RKKKV SWCKAVE++F LADLSI
Sbjct: 500 RKKKVASWCKAVERTFDLADLSI 522


>AT1G80460.2 | Symbols: NHO1, GLI1 | NHO1 (nonhost resistance to P.
           s. phaseolicola 1); carbohydrate kinase/ glycerol kinase
           | chr1:30246960-30249055 REVERSE
          Length = 482

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 39/53 (73%)

Query: 47  IGVWKEEEIFATGEKVKTATTFHPNLHEQQRKKKVESWCKAVEKSFGLADLSI 99
           +G WKE +IF +GEK K +  F P + E  RKKKV SWCKAVE++F LADLSI
Sbjct: 430 VGFWKEADIFESGEKAKNSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 482