Jatropha Genome Database

JcCA0043071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0043071.10 + phase: 0 /partial
         (258 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66460.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putat...   323   7e-89
AT1G02310.1 | Symbols:  | glycosyl hydrolase family protein 5 / ...   242   1e-64
AT3G10890.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putat...   241   4e-64
AT4G28320.1 | Symbols:  | glycosyl hydrolase family 5 protein / ...   225   2e-59
AT2G20680.1 | Symbols:  | glycosyl hydrolase family 5 protein / ...   223   8e-59
AT5G01930.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putat...   220   6e-58
AT3G10900.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putat...   215   2e-56
AT3G30540.1 | Symbols:  | (1-4)-beta-mannan endohydrolase family...   177   4e-45

>AT5G66460.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putative
           | chr5:26538911-26540837 REVERSE
          Length = 431

 Score =  323 bits (828), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 151/260 (58%), Positives = 189/260 (72%), Gaps = 6/260 (2%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
            VL R N+ T V YKD+PTIMAWELMNEPRC SDPSGR IQAWI EMA+++KS+D NHLL
Sbjct: 176 AVLNRFNTFTKVHYKDDPTIMAWELMNEPRCPSDPSGRAIQAWITEMAAHVKSLDRNHLL 235

Query: 61  EAGLEGFYGPTSSSKQQYNPNFQIGTDFIANNQIPGIDFATVHSYPDQWLPNSNTEGQES 120
           EAGLEGFYG +S   +  NP  Q GTDFIANN+IPGIDF TVHSYPD+W P+S+ + Q  
Sbjct: 236 EAGLEGFYGQSSPQSKTLNPPGQFGTDFIANNRIPGIDFVTVHSYPDEWFPDSSEQSQMD 295

Query: 121 FLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAYN--QRDQLFTTIYSAIYSSARXXXX 178
           FLN WL+ HIQDAQN+LHKP++ AEFGKS +   Y   QRD +F T+YS IY SA+    
Sbjct: 296 FLNKWLDAHIQDAQNVLHKPIILAEFGKSMKKPGYTPAQRDIVFNTVYSKIYGSAKRGGA 355

Query: 179 XXXXMFWQLMTEGMDSFRDGYEVVFSENPSTASIIVDQSQKLNKIRKMYARLRNIEKWNR 238
               +FWQL+  G+D+F+DGY ++ S++ ST ++I  QS+KL  IRK++AR+ N+EKW R
Sbjct: 356 AAGGLFWQLLVNGIDNFQDGYGIILSQSSSTVNVISQQSRKLTLIRKIFARMINVEKWKR 415

Query: 239 AREIRQAQWWAGKNSSKVGN 258
           AR     Q   GK   K+ N
Sbjct: 416 AR----GQGQVGKRGHKINN 431


>AT1G02310.1 | Symbols:  | glycosyl hydrolase family protein 5 /
           cellulase family protein / (1-4)-beta-mannan
           endohydrolase, putative | chr1:458243-460652 REVERSE
          Length = 411

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/231 (50%), Positives = 152/231 (65%), Gaps = 7/231 (3%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
           TVLTR+N+ITG  YKD+PTI +WEL+NEPRC    +   +Q W+ EMASY+KSID NHLL
Sbjct: 171 TVLTRKNTITGRMYKDDPTIFSWELINEPRCNDSTASNILQDWVKEMASYVKSIDSNHLL 230

Query: 61  EAGLEGFYGPTSSSKQQYNPNFQI--GTDFIANNQIPGIDFATVHSYPDQWLP--NSNTE 116
           E GLEGFYG +   +  YNP  ++  GTDFI NNQIP IDFAT+H YPD WLP  +S T 
Sbjct: 231 EIGLEGFYGESIPERTVYNPGGRVLTGTDFITNNQIPDIDFATIHIYPDSWLPLQSSRTG 290

Query: 117 GQESFLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAYN--QRDQLFTTIYSAIYSSAR 174
            Q++F++ W+  HI+D  NI+ KP+L  EFGKSS+   ++  +R++ F  +Y  IY SAR
Sbjct: 291 EQDTFVDRWIGAHIEDCDNIIKKPLLITEFGKSSKYPGFSLEKRNKFFQRVYDVIYDSAR 350

Query: 175 XXXXXXXXMFWQLMTEGMDSFRDGYEVVFSENP-STASIIVDQSQKLNKIR 224
                   +FWQL T       DGYEV     P +TA +I DQS KL  ++
Sbjct: 351 AGGSCTGGVFWQLTTNRTGLLGDGYEVFMQAGPNTTAQLIADQSSKLKNLK 401


>AT3G10890.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putative
           | chr3:3407455-3409000 REVERSE
          Length = 414

 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 112/229 (48%), Positives = 154/229 (67%), Gaps = 5/229 (2%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
           T++ R N+ T V YKDEPTIM WELMNEP+C +DPSG+T+ AW+ EMA Y+KS+D  HLL
Sbjct: 176 TMVNRVNTFTKVEYKDEPTIMGWELMNEPQCRADPSGKTLTAWMNEMALYVKSVDSKHLL 235

Query: 61  EAGLEGFYGPTSSS-KQQYNPNFQ--IGTDFIANNQIPGIDFATVHSYPDQWLPNSNTEG 117
             GLEGFYG +S   K   NP     +GTDFIAN+++  IDFA++HSYPD W PN + + 
Sbjct: 236 STGLEGFYGDSSPQRKTSLNPVAANVLGTDFIANHKLDAIDFASIHSYPDLWFPNLDEKS 295

Query: 118 QESFLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAYN--QRDQLFTTIYSAIYSSARX 175
           + + L  WL  H++DAQNIL KP++  EFGK + T  Y   QRD +F   +  IY SA  
Sbjct: 296 RLNLLRKWLECHLEDAQNILKKPLILGEFGKPTNTPGYTQAQRDAVFNATFDTIYESAEK 355

Query: 176 XXXXXXXMFWQLMTEGMDSFRDGYEVVFSENPSTASIIVDQSQKLNKIR 224
                  +FW ++++GM++F+D   +V SEN +T +II ++S+KL  IR
Sbjct: 356 GGPAAGALFWHVISDGMNNFKDPLSIVLSENSTTVNIITEESRKLGLIR 404


>AT4G28320.1 | Symbols:  | glycosyl hydrolase family 5 protein /
           cellulase family protein | chr4:14018293-14019972
           REVERSE
          Length = 431

 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/228 (45%), Positives = 145/228 (63%), Gaps = 5/228 (2%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
            +LTR+NS+TG+ Y+++PTI AWEL+NEPRCT+D SG+T+Q WI EM  ++KSID  HLL
Sbjct: 187 VLLTRKNSVTGIEYRNDPTIFAWELINEPRCTTDVSGKTLQDWIDEMTGFIKSIDDKHLL 246

Query: 61  EAGLEGFYGPTSSSKQQYNPN---FQIGTDFIANNQIPGIDFATVHSYPDQWLPNSNTEG 117
             GLEGFYGP S      NP     Q+GTDF+ N+    IDFA+VH YPD W  N   E 
Sbjct: 247 TVGLEGFYGPNSPKGLTVNPEQWASQLGTDFVQNSNSSNIDFASVHIYPDHWFHNQTFEE 306

Query: 118 QESFLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAY--NQRDQLFTTIYSAIYSSARX 175
           +  F+  W+ +HI+D    L KPVLF EFG S++   Y  +QRD+ +  I+  +Y SA+ 
Sbjct: 307 KLKFVVKWMQSHIEDGLKELKKPVLFTEFGLSNQNKDYEPSQRDKFYRIIFDVVYKSAKR 366

Query: 176 XXXXXXXMFWQLMTEGMDSFRDGYEVVFSENPSTASIIVDQSQKLNKI 223
                  + WQL  EGM++F D + +V  E  S   ++++QS +L K+
Sbjct: 367 KKSGAGTLVWQLFMEGMETFNDDFGIVPHEQDSIYKLMIEQSCRLGKV 414


>AT2G20680.1 | Symbols:  | glycosyl hydrolase family 5 protein /
           cellulase family protein | chr2:8921024-8923066 FORWARD
          Length = 433

 Score =  223 bits (568), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 104/228 (45%), Positives = 147/228 (64%), Gaps = 5/228 (2%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
            +LTR+NS+TG+ Y+++PTI AWEL+NEPRC SD SG T+Q WI EM +++KSID  HLL
Sbjct: 188 VLLTRKNSLTGIEYRNDPTIFAWELINEPRCMSDVSGDTLQDWINEMTAFIKSIDNKHLL 247

Query: 61  EAGLEGFYGPTSSSKQQYNPN---FQIGTDFIANNQIPGIDFATVHSYPDQWLPNSNTEG 117
             GLEGFYGP+S  K   NP     ++G+DF+ N+  P IDFA+VH YPD W  +   E 
Sbjct: 248 TVGLEGFYGPSSPKKLTVNPERWASELGSDFVRNSDSPNIDFASVHIYPDHWFHDQGFEE 307

Query: 118 QESFLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAYN--QRDQLFTTIYSAIYSSARX 175
           +  F+  W+ +HI+D    L KPVLF EFG S+    Y+  QRD+ + TI+  IY SA+ 
Sbjct: 308 KLKFVVKWMLSHIEDGDKELKKPVLFTEFGLSNLNKDYDPSQRDRFYRTIFDVIYKSAKR 367

Query: 176 XXXXXXXMFWQLMTEGMDSFRDGYEVVFSENPSTASIIVDQSQKLNKI 223
                  + WQ + EGM+ F D + +V  E  S   ++++QS +L++I
Sbjct: 368 KRSGAGTLVWQFLIEGMEGFNDDFGIVPWEQDSIQRLMIEQSCRLSRI 415


>AT5G01930.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putative
           | chr5:361189-362867 REVERSE
          Length = 448

 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 144/225 (64%), Gaps = 5/225 (2%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
           TVL R N+ T + YK++PTI AWELMNEPRC SDPSG  +Q+WI EMA ++KS+D  HL+
Sbjct: 192 TVLNRVNTFTNITYKNDPTIFAWELMNEPRCPSDPSGDKLQSWIQEMAVFVKSLDAKHLV 251

Query: 61  EAGLEGFYGPTSSSKQQYNPN---FQIGTDFIANNQIPGIDFATVHSYPDQWLPNSNTEG 117
           E GLEGFYGP++ ++ ++NPN    Q+GTDFI NNQ+ GIDFA+VH YPD W+  + +  
Sbjct: 252 EIGLEGFYGPSAPARTRFNPNPYAAQVGTDFIRNNQVLGIDFASVHVYPDSWISPAVSNS 311

Query: 118 QESFLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAYNQ--RDQLFTTIYSAIYSSARX 175
              F ++W+  H++DA+  L  PVLF EFG S+    +N   RD +  T+Y    +S R 
Sbjct: 312 FLEFTSSWMQAHVEDAEMYLGMPVLFTEFGVSAHDPGFNTSFRDMMLNTVYKMTLNSTRK 371

Query: 176 XXXXXXXMFWQLMTEGMDSFRDGYEVVFSENPSTASIIVDQSQKL 220
                  + WQ+  +G +   DGY V  +   + + II  QS++L
Sbjct: 372 GGAGAGSLVWQVFPQGAEFMDDGYAVYLTRAHTASKIISLQSKRL 416


>AT3G10900.1 | Symbols:  | (1-4)-beta-mannan endohydrolase, putative
           | chr3:3410252-3412070 REVERSE
          Length = 408

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 142/225 (63%), Gaps = 5/225 (2%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
           TVL R N+ T VAYKDEP IMAW+LMNEPRC  D SG+T+  WI EMA ++KS+D NHLL
Sbjct: 175 TVLNRVNTFTKVAYKDEPAIMAWQLMNEPRCGVDKSGKTLMDWINEMAPFVKSVDPNHLL 234

Query: 61  EAGLEGFYGPTSSS-KQQYNPNFQ--IGTDFIANNQIPGIDFATVHSYPDQWLPNSNTEG 117
             G EGFYG +S   K   NP     +G DFIAN+ I  IDFA++H   D W    +   
Sbjct: 235 STGHEGFYGDSSPERKNSLNPVSANTVGADFIANHNIDAIDFASMHCGSDLWFQRLDQNS 294

Query: 118 QESFLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAYN--QRDQLFTTIYSAIYSSARX 175
           + +F+  WL  HI+DAQNIL KPV+ AEFG  S T  Y    RD +FTT Y  IY+SA+ 
Sbjct: 295 RLAFIKRWLEGHIEDAQNILKKPVILAEFGLGSDTPRYTLANRDGVFTTTYDIIYASAQK 354

Query: 176 XXXXXXXMFWQLMTEGMDSFRDGYEVVFSENPSTASIIVDQSQKL 220
                  +FW++++EGM +F     ++ S+  ST +II + ++K+
Sbjct: 355 GGSAAGALFWEVISEGMSNFAGPSSIILSDKSSTVNIISEHARKM 399


>AT3G30540.1 | Symbols:  | (1-4)-beta-mannan endohydrolase family |
           chr3:12144792-12146475 REVERSE
          Length = 351

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 111/175 (63%), Gaps = 5/175 (2%)

Query: 1   TVLTRRNSITGVAYKDEPTIMAWELMNEPRCTSDPSGRTIQAWIAEMASYLKSIDGNHLL 60
           T+L R N+ T VAYKDEP  MAW+LMNEPRC  D SG+T+ AWI EMA ++KS+D NHLL
Sbjct: 159 TMLNRVNTFTKVAYKDEPASMAWQLMNEPRCGVDRSGKTLMAWINEMALFVKSVDPNHLL 218

Query: 61  EAGLEGFYGPTS-SSKQQYNP--NFQIGTDFIANNQIPGIDFATVHSYPDQWLPNSNTEG 117
             G EGFYG +S   K   NP     +G DFIAN+ I  IDFA++H   D W    +   
Sbjct: 219 STGHEGFYGDSSPERKNSLNPVSANTVGADFIANHNIDAIDFASMHCGSDLWFQRLDQNS 278

Query: 118 QESFLNNWLNNHIQDAQNILHKPVLFAEFGKSSRTAAYN--QRDQLFTTIYSAIY 170
           + +F+  WL  HI+DAQN L KPV+ AEFG  S T  Y    RD +FTT Y  IY
Sbjct: 279 RLAFIKRWLEGHIEDAQNNLKKPVILAEFGLGSDTPRYTLANRDDVFTTTYDIIY 333