Jatropha Genome Database

JcCA0042101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0042101.10 + phase: 0 
         (462 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38770.1 | Symbols: EMB2765 | EMB2765 (EMBRYO DEFECTIVE 2765)...   654   0.0  

>AT2G38770.1 | Symbols: EMB2765 | EMB2765 (EMBRYO DEFECTIVE 2765) |
           chr2:16203185-16210253 REVERSE
          Length = 1509

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/440 (73%), Positives = 375/440 (85%), Gaps = 9/440 (2%)

Query: 1   MTKVYGTGAYDFKRHRVAEYPVELQTQLSDKPVESKPGSTLPSSITLSEIQRDRLTKIAA 60
           MTKVYGTG YDFKRHRVAEYP+EL +  ++KP+ESKPGS LPSSITLSEIQ+DRLTKIA 
Sbjct: 1   MTKVYGTGTYDFKRHRVAEYPLELPSHPAEKPLESKPGSNLPSSITLSEIQQDRLTKIAE 60

Query: 61  ENWLKTGGTESDGTKKKEFDPELVKQIYETELKVKEGRKTVPLQRVMILEVSQYLENYLW 120
           E+W+KTGG       +K FDPE+VK+IY TELKV  GRK VPLQRVMILEVSQYLENYLW
Sbjct: 61  ESWIKTGGK----LPEKPFDPEVVKEIYVTELKVTSGRKPVPLQRVMILEVSQYLENYLW 116

Query: 121 PNFDPETATFEHVMSMILMINEKFRENVAAWLCFYDRKDVFKGFLERVLQLKEGRELSIS 180
           PNFDPETATFEHVMSMILMINEKFRENVAAW+CF+DR D+FK FL++VL+LKEGR+L+I+
Sbjct: 117 PNFDPETATFEHVMSMILMINEKFRENVAAWICFHDRDDLFKKFLQKVLRLKEGRDLTIA 176

Query: 181 EKTNYLVFMINAFQSLEDEIVSETVLKLGSLQSWHCLSYGRFQMELCLNPELIKKWKRMV 240
           EKTNYLVFMINAFQSLED +V+E VL L  LQSWH LSYGRFQMELCL P+LIKKWKR  
Sbjct: 177 EKTNYLVFMINAFQSLEDAVVNEIVLSLAGLQSWHSLSYGRFQMELCLQPDLIKKWKRSS 236

Query: 241 KREIKEAMKGGQPFDPSTSLEVKFLRNLIEEFLDVLDFQIFPQKSSINGDGLASGFEEVD 300
           K+   EA   G+ FD S+S E  F+R LIEEF++VLD  +F  +         +G + VD
Sbjct: 237 KKWAAEAKSKGEKFDLSSSPEANFVRGLIEEFVEVLDHGVFADEVDD-----TAGSQLVD 291

Query: 301 DSAVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYKHEKGKLFAQLVDL 360
           DS+VLYCERFMEFLID+L+QLPTRRYLRPLVAD+AVVAKC LSALYKHEKGKLFAQLVDL
Sbjct: 292 DSSVLYCERFMEFLIDMLNQLPTRRYLRPLVADIAVVAKCRLSALYKHEKGKLFAQLVDL 351

Query: 361 LQFYERFEINDHSGTQLTDDEVLQSHYDRFQAFQLLAFKKIPKLRELALSNIGAIHKRAD 420
           LQFYE+FEI DH GTQLTDDE LQ HYDRF AFQLLAFKKIPKL++L+L+NIG+IHK +D
Sbjct: 352 LQFYEKFEIKDHDGTQLTDDEALQFHYDRFMAFQLLAFKKIPKLQDLSLANIGSIHKSSD 411

Query: 421 LSKKLSVLSPEELKDLVCAR 440
           L ++LSVLS E+L+D+VC++
Sbjct: 412 LRRRLSVLSLEDLRDVVCSK 431