Jatropha Genome Database

JcCA0040611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0040611.10 - phase: 2 /TE/partial
         (175 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403...    85   3e-17

>AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403
           REVERSE
          Length = 237

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 71/133 (53%)

Query: 43  ARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL* 102
           ++   NY +W    +  L    K GF+DG++  P     +Y P ++ N MV+ WL  S+ 
Sbjct: 36  SKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMT 95

Query: 103 PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL* 162
             + +S+++ + A  +W+DL+  F     ++I+ L+  +   RQG  SV +YF +L  + 
Sbjct: 96  DKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVW 155

Query: 163 DELMNFRPIPSCE 175
            EL  + PIP C+
Sbjct: 156 MELSEYAPIPECK 168