Jatropha Genome Database

JcCA0040601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0040601.10 - phase: 2 /pseudo/partial
         (256 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62770.3 | Symbols: AtATG18a | AtATG18a | chr3:23219091-23221...   416   e-117
AT3G62770.1 | Symbols: AtATG18a | AtATG18a | chr3:23218858-23221...   416   e-116
AT3G56440.1 | Symbols: ATATG18D | AtATG18d | chr3:20926874-20928...   326   9e-90
AT2G40810.2 | Symbols: ATATG18C | AtATG18c | chr2:17032686-17034...   326   1e-89
AT2G40810.1 | Symbols: ATATG18C | AtATG18c | chr2:17032686-17034...   326   1e-89
AT5G05150.1 | Symbols: ATATG18E, ATG18E | AtATG18e | chr5:152484...   251   2e-67
AT4G30510.2 | Symbols: ATATG18B | AtATG18b | chr4:14905664-14906...   117   5e-27
AT4G30510.1 | Symbols: ATATG18B, ATG18B | AtATG18b | chr4:149052...   117   6e-27
AT1G03380.1 | Symbols: ATATG18G | AtATG18g | chr1:836155-840362 ...    50   9e-07

>AT3G62770.3 | Symbols: AtATG18a | AtATG18a | chr3:23219091-23221110
           REVERSE
          Length = 396

 Score =  416 bits (1069), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/261 (80%), Positives = 227/261 (86%), Gaps = 9/261 (3%)

Query: 2   GGGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 61
           GGG+ VVEMLFRCNILALVGGG DPQYPPNKVMIWDDHQ RCIGELSFRS+VRSV+LRRD
Sbjct: 117 GGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRD 176

Query: 62  RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHY 121
           RIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQG GS+V+VCPGLQKGQVR+EHY
Sbjct: 177 RIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHY 236

Query: 122 ASKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEI 181
           ASKRTKF+MAHDSRIACFALTQDG LLATAS+KGTLVRIFNT DGTL QEVRRGADRAEI
Sbjct: 237 ASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEI 296

Query: 182 YSLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPGTDKSGNTTDPNNAVTSPTSSLSFFKG 241
           YSLAFSS AQWLAVSSDKGTVHVF LK+N GS   D S     P+   +SP+SSLS FKG
Sbjct: 297 YSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSS--RIAPDATPSSPSSSLSLFKG 354

Query: 242 VLP*VF-------QLRVVSGS 255
           VLP  F       Q R+V G+
Sbjct: 355 VLPRYFSSEWSVAQFRLVEGT 375


>AT3G62770.1 | Symbols: AtATG18a | AtATG18a | chr3:23218858-23221110
           REVERSE
          Length = 425

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/261 (80%), Positives = 227/261 (86%), Gaps = 9/261 (3%)

Query: 2   GGGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 61
           GGG+ VVEMLFRCNILALVGGG DPQYPPNKVMIWDDHQ RCIGELSFRS+VRSV+LRRD
Sbjct: 117 GGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRD 176

Query: 62  RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHY 121
           RIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQG GS+V+VCPGLQKGQVR+EHY
Sbjct: 177 RIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHY 236

Query: 122 ASKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEI 181
           ASKRTKF+MAHDSRIACFALTQDG LLATAS+KGTLVRIFNT DGTL QEVRRGADRAEI
Sbjct: 237 ASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEI 296

Query: 182 YSLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPGTDKSGNTTDPNNAVTSPTSSLSFFKG 241
           YSLAFSS AQWLAVSSDKGTVHVF LK+N GS   D S     P+   +SP+SSLS FKG
Sbjct: 297 YSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSS--RIAPDATPSSPSSSLSLFKG 354

Query: 242 VLP*VF-------QLRVVSGS 255
           VLP  F       Q R+V G+
Sbjct: 355 VLPRYFSSEWSVAQFRLVEGT 375


>AT3G56440.1 | Symbols: ATATG18D | AtATG18d | chr3:20926874-20928797
           FORWARD
          Length = 391

 Score =  326 bits (835), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 159/253 (62%), Positives = 190/253 (75%), Gaps = 8/253 (3%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           GG  +VEMLFR NILALVGGG + QYP NKV+IWDDHQ RCI E +FRSE+R+VKLRRDR
Sbjct: 75  GGFKIVEMLFRSNILALVGGGPNSQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDR 134

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYA 122
           I+VVLE KI+VYNF DL+LLHQIE +ANP+GLC +S    + V+ CPG+++G+VRVEH+ 
Sbjct: 135 IVVVLEHKIYVYNFMDLRLLHQIENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFG 194

Query: 123 SKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIY 182
               + I AHDS IAC  LT DG LLATASTKGTL+RIFNT DGT LQEVRRG DRA+IY
Sbjct: 195 LNMVQIINAHDSNIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIY 254

Query: 183 SLAFSSTAQWLAVSSDKGTVHVFSLKI-----NPGSPGTDKSGNTTDPNNAVTS---PTS 234
           S+A S   QWLAVSSDKGTVH+FSL++     +  S   + S N+  P  +  S   P S
Sbjct: 255 SIALSPNVQWLAVSSDKGTVHIFSLRVRVIGEDAYSTEHETSSNSLQPLVSPASGANPGS 314

Query: 235 SLSFFKGVLP*VF 247
           SLSF +GVLP  F
Sbjct: 315 SLSFLRGVLPKYF 327


>AT2G40810.2 | Symbols: ATATG18C | AtATG18c | chr2:17032686-17034338
           FORWARD
          Length = 393

 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/259 (62%), Positives = 192/259 (74%), Gaps = 14/259 (5%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           GG  +VEMLFR NILALVGGG + QYP +KV+IWDDHQSRCI E +FRSE+R+VKLRRDR
Sbjct: 71  GGFKIVEMLFRSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDR 130

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYA 122
           I+VVLE KI+VYNF DL+LLHQIET ANP+GLC +S  + + V+ CPGL +G++RVEH+ 
Sbjct: 131 IVVVLEHKIYVYNFMDLRLLHQIETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFG 190

Query: 123 SKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIY 182
               + I AHDS IAC  LT DG LLATASTKGTL+RIFNT DGT LQEVRRG DRA+IY
Sbjct: 191 LNMVQIINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIY 250

Query: 183 SLAFSSTAQWLAVSSDKGTVHVFSLKIN---PGSPGTDKSGNTTDPN--NAV-------- 229
           S+A S   QWLAVSSDKGTVH+FSL++      S  T+     T  N  N++        
Sbjct: 251 SIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSYSTENGALLTQQNYSNSLQGLVSPTI 310

Query: 230 -TSPTSSLSFFKGVLP*VF 247
            T+P SSLSF +GVLP  F
Sbjct: 311 GTNPGSSLSFMRGVLPKYF 329


>AT2G40810.1 | Symbols: ATATG18C | AtATG18c | chr2:17032686-17034338
           FORWARD
          Length = 393

 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/259 (62%), Positives = 192/259 (74%), Gaps = 14/259 (5%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           GG  +VEMLFR NILALVGGG + QYP +KV+IWDDHQSRCI E +FRSE+R+VKLRRDR
Sbjct: 71  GGFKIVEMLFRSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDR 130

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYA 122
           I+VVLE KI+VYNF DL+LLHQIET ANP+GLC +S  + + V+ CPGL +G++RVEH+ 
Sbjct: 131 IVVVLEHKIYVYNFMDLRLLHQIETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFG 190

Query: 123 SKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIY 182
               + I AHDS IAC  LT DG LLATASTKGTL+RIFNT DGT LQEVRRG DRA+IY
Sbjct: 191 LNMVQIINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIY 250

Query: 183 SLAFSSTAQWLAVSSDKGTVHVFSLKIN---PGSPGTDKSGNTTDPN--NAV-------- 229
           S+A S   QWLAVSSDKGTVH+FSL++      S  T+     T  N  N++        
Sbjct: 251 SIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSYSTENGALLTQQNYSNSLQGLVSPTI 310

Query: 230 -TSPTSSLSFFKGVLP*VF 247
            T+P SSLSF +GVLP  F
Sbjct: 311 GTNPGSSLSFMRGVLPKYF 329


>AT5G05150.1 | Symbols: ATATG18E, ATG18E | AtATG18e |
           chr5:1524841-1526199 REVERSE
          Length = 374

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/242 (51%), Positives = 160/242 (66%), Gaps = 17/242 (7%)

Query: 4   GIGVVEMLFRCNILALVGGG-SDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           G  V EMLF  N+ A VG G ++ +YPPNKV +WDD+++ C+ EL+F+SEV +VKL R+ 
Sbjct: 74  GFKVAEMLFLSNLFAFVGNGYNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREH 133

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYA 122
           ++VVL+Q I+VY F +LK+   IET+ NPKGLC V+      V+ CPG   GQV+V    
Sbjct: 134 VVVVLKQNIYVYTFNNLKVDRVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLR 193

Query: 123 SKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIY 182
               KFI AHDS IAC  LT DG LLATASTKGTL+RIFN  DGTLLQE RRG +RAEIY
Sbjct: 194 WNVIKFIKAHDSAIACMTLTLDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIY 253

Query: 183 SLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPGTDKSGNTTDPNNAVTSPTSSLSFFKGV 242
           ++A SS  +W+A SS+KGT+HVF L+                P+     P SS SF + +
Sbjct: 254 NVAISSNLKWVAASSEKGTLHVFRLR----------------PDILSFDPASSSSFIRVI 297

Query: 243 LP 244
           LP
Sbjct: 298 LP 299


>AT4G30510.2 | Symbols: ATATG18B | AtATG18b | chr4:14905664-14906915
           REVERSE
          Length = 248

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 5/205 (2%)

Query: 10  MLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ 69
           ML+  ++LA+VG G      P ++ ++       + EL+F + + +V++ + R++VVL +
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 70  KIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPG-LQKGQVRVEHYASKRTKF 128
           K FVY+   L +L  I+T+ NPKGL A S       +  P    KG V V +    ++  
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHS 120

Query: 129 -IMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIYSLAFS 187
            I AH S +A  AL+ +G  +AT S +GTL+R+   ++ T     RRG   + IYSL+F 
Sbjct: 121 EIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query: 188 STAQW---LAVSSDKGTVHVFSLKI 209
            + Q    L  +S  G++H FSL +
Sbjct: 181 PSTQLPDILIATSSSGSIHAFSLSL 205


>AT4G30510.1 | Symbols: ATATG18B, ATG18B | AtATG18b |
           chr4:14905299-14906915 REVERSE
          Length = 312

 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 5/205 (2%)

Query: 10  MLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ 69
           ML+  ++LA+VG G      P ++ ++       + EL+F + + +V++ + R++VVL +
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 70  KIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPG-LQKGQVRVEHYASKRTKF 128
           K FVY+   L +L  I+T+ NPKGL A S       +  P    KG V V +    ++  
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHS 120

Query: 129 -IMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIYSLAFS 187
            I AH S +A  AL+ +G  +AT S +GTL+R+   ++ T     RRG   + IYSL+F 
Sbjct: 121 EIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query: 188 STAQW---LAVSSDKGTVHVFSLKI 209
            + Q    L  +S  G++H FSL +
Sbjct: 181 PSTQLPDILIATSSSGSIHAFSLSL 205


>AT1G03380.1 | Symbols: ATATG18G | AtATG18g | chr1:836155-840362
           FORWARD
          Length = 959

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 21/126 (16%)

Query: 131 AHDSRIACFALTQDGQLLATASTKGTLVRIF-------NTADGTLLQE----------VR 173
           AH S I+       G LL TAS  G  + +F       + A G L  E          + 
Sbjct: 376 AHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDLSYEWESSHVHLFKLH 435

Query: 174 RGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPGTDKSGNTTDPNNAVTSPT 233
           RG   A +  + FS  +QW+A+ S KGT H+F L     S G+D +    +       P 
Sbjct: 436 RGITSAIVQDICFSQQSQWVAIISSKGTCHIFVL----NSSGSDAAFQPCEGEEPTRLPA 491

Query: 234 SSLSFF 239
           SSL ++
Sbjct: 492 SSLPWW 497