Jatropha Genome Database

JcCA0036251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0036251.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74520.1 | Symbols: ATHVA22A | ATHVA22A | chr1:28008109-28009...   142   1e-34
AT1G69700.1 | Symbols: ATHVA22C | ATHVA22C | chr1:26220337-26221...   100   4e-22
AT5G62490.1 | Symbols: ATHVA22B, HVA22B | ATHVA22B | chr5:250902...    78   2e-15
AT2G42820.1 | Symbols: HVA22F | HVA22F (HVA22-LIKE PROTEIN F) | ...    51   3e-07

>AT1G74520.1 | Symbols: ATHVA22A | ATHVA22A | chr1:28008109-28009156
           REVERSE
          Length = 177

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 75/82 (91%), Gaps = 1/82 (1%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           +PIWSY KLI+TCWLVIPYFSGAAYVYEHFVRP+FVNP+ ++NIWYVP+K D+F KPDD+
Sbjct: 72  LPIWSYMKLILTCWLVIPYFSGAAYVYEHFVRPVFVNPR-SINIWYVPKKMDIFRKPDDV 130

Query: 122 LTAAERYIEENGTEAFEKLIHR 143
           LTAAE+YI ENG +AFEK++ R
Sbjct: 131 LTAAEKYIAENGPDAFEKILSR 152


>AT1G69700.1 | Symbols: ATHVA22C | ATHVA22C | chr1:26220337-26221663
           FORWARD
          Length = 184

 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 64/83 (77%), Gaps = 4/83 (4%)

Query: 63  PIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQ-TVNIWYVPRKK-DVFSK--P 118
           PIW Y KL   CWLV+P F+GA ++Y+HF+RP + +P++ T  IWYVP KK + F K   
Sbjct: 75  PIWPYMKLFGICWLVLPQFNGAEHIYKHFIRPFYRDPQRATTKIWYVPHKKFNFFPKRDD 134

Query: 119 DDILTAAERYIEENGTEAFEKLI 141
           DDILTAAE+Y+E++GTEAFE++I
Sbjct: 135 DDILTAAEKYMEQHGTEAFERMI 157


>AT5G62490.1 | Symbols: ATHVA22B, HVA22B | ATHVA22B |
           chr5:25090206-25091345 FORWARD
          Length = 167

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 7/94 (7%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           IP++ YAKL +T WLV+P  +GAAY+YEH+VR   ++P  TVN+WYVP KKD     DD+
Sbjct: 72  IPLYPYAKLALTSWLVLPGMNGAAYLYEHYVRSFLLSP-HTVNVWYVPAKKD-----DDL 125

Query: 122 LTAAERYIEENGTEA-FEKLIHRVSDEALTLGFS 154
              A ++   N + A  EK++  V   A  +G S
Sbjct: 126 GATAGKFTPVNDSGAPQEKIVSSVDTSAKYVGHS 159


>AT2G42820.1 | Symbols: HVA22F | HVA22F (HVA22-LIKE PROTEIN F) |
           chr2:17817460-17818301 REVERSE
          Length = 158

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVR---PLFVNPKQTVNIWYVPRKKDVFSKP 118
           +P W Y KL+   WLV+P FSGAAY+Y +FVR    + +N     N  Y   ++ V    
Sbjct: 67  LPFWPYLKLLFCMWLVLPMFSGAAYIYSNFVRQYVKIGMNVGGGTN--YTDEQRRVLQMM 124

Query: 119 D-DILTAAERYIEENGTEAFEKLIHRVSDEA 148
             D   + + Y++  G ++ EK I     E 
Sbjct: 125 SLDARKSVQDYVDRFGWDSVEKAIKAAEKET 155