Jatropha Genome Database

JcCA0030161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0030161.10 + phase: 0 /partial
         (167 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34640.1 | Symbols: SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); ...   281   9e-77
AT4G34650.1 | Symbols: SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnes...   262   6e-71

>AT4G34640.1 | Symbols: SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1);
           farnesyl-diphosphate farnesyltransferase |
           chr4:16538489-16541655 FORWARD
          Length = 410

 Score =  281 bits (720), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 133/165 (80%), Positives = 150/165 (90%), Gaps = 2/165 (1%)

Query: 1   FHASELEDLAPD--VLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVDKLE 58
           F A+  E L PD   +SNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPR+IW KY DKLE
Sbjct: 184 FLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYADKLE 243

Query: 59  DLKYEENSLKAVRCLNDMVTNALMHVDDCLKYMSALRDPAIFRFCVIPQIMAIGTLALCY 118
           DLKYEEN+ K+V+CLN+MVTNALMH++DCLKYM +LRDP+IFRFC IPQIMAIGTLALCY
Sbjct: 244 DLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLALCY 303

Query: 119 NNIEVFRGVVKMRRGLTAKVIYQTKSMADVYGAFFDFSCMLKSKV 163
           NN +VFRGVVK+RRGLTAKVI +TK+MADVYGAF+DFSCMLK+KV
Sbjct: 304 NNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKV 348


>AT4G34650.1 | Symbols: SQS2 | SQS2 (SQUALENE SYNTHASE 2);
           farnesyl-diphosphate farnesyltransferase |
           chr4:16542377-16544915 FORWARD
          Length = 413

 Score =  262 bits (670), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 145/165 (87%), Gaps = 2/165 (1%)

Query: 1   FHASELEDLAPD--VLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVDKLE 58
           F ASELE L PD   +SNS GLFLQKTNII+DYLEDINE PKSRMFWPR+IW KYVDKLE
Sbjct: 184 FIASELEILTPDWKQISNSTGLFLQKTNIIKDYLEDINERPKSRMFWPREIWGKYVDKLE 243

Query: 59  DLKYEENSLKAVRCLNDMVTNALMHVDDCLKYMSALRDPAIFRFCVIPQIMAIGTLALCY 118
           D K EE + KAV+CLN+MVTNAL HV+DCLK +++LRDPAIF+ C IPQI+AIGTLALCY
Sbjct: 244 DFKNEEKATKAVQCLNEMVTNALNHVEDCLKSLASLRDPAIFQSCAIPQIVAIGTLALCY 303

Query: 119 NNIEVFRGVVKMRRGLTAKVIYQTKSMADVYGAFFDFSCMLKSKV 163
           NN++VFRGVV++RRGL AKVI +TK+M DVYGAF+DFSCML++KV
Sbjct: 304 NNVQVFRGVVRLRRGLIAKVIDRTKTMDDVYGAFYDFSCMLQTKV 348