Jatropha Genome Database
- JcCA0029841.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0029841.30 + phase: 0 /partial
(361 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridylate binding pro... 564 e-161
AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridylate binding pro... 555 e-158
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 544 e-155
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein, p... 520 e-148
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein, p... 514 e-146
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (Arabidopsis thaliana... 134 7e-32
AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putati... 133 2e-31
AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putati... 132 3e-31
AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-binding protein ... 131 8e-31
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding protein 45... 130 1e-30
AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C (ARABIDOPSIS THALIANA... 126 2e-29
AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding | chr4:1... 124 1e-28
AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-binding protein ... 123 2e-28
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding protein 45... 120 1e-27
AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-binding protei... 118 6e-27
AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo defective 2444)... 108 6e-24
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDI... 102 4e-22
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 101 7e-22
AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); ... 100 2e-21
AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTE... 98 8e-21
AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C (ARABIDOPSIS THALIANA... 98 9e-21
AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING PROTE... 96 5e-20
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5); ... 93 2e-19
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31 (31... 88 9e-18
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 84 2e-16
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 83 2e-16
AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); ... 83 3e-16
AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); ... 82 4e-16
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 80 2e-15
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 80 2e-15
AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding | chr3:1... 75 9e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH RNA-BI... 72 7e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH RNA-BI... 72 7e-13
AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing... 72 8e-13
AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 70 3e-12
AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 68 8e-12
AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 68 8e-12
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2 (GLYCINE-... 68 8e-12
AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 68 8e-12
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 67 1e-11
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 67 2e-11
AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein, puta... 67 2e-11
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 67 2e-11
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 65 5e-11
AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U) bindin... 65 9e-11
AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U) bindin... 65 9e-11
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 64 1e-10
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 64 1e-10
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 62 5e-10
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 62 6e-10
AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 61 1e-09
AT2G43410.1 | Symbols: FPA | FPA; RNA binding | chr2:18026397-18... 60 2e-09
AT2G43410.4 | Symbols: FPA | FPA; RNA binding | chr2:18026397-18... 60 2e-09
AT2G43410.3 | Symbols: FPA | FPA; RNA binding | chr2:18026397-18... 60 2e-09
AT2G43410.2 | Symbols: FPA | FPA; RNA binding | chr2:18026397-18... 60 2e-09
AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL PROTEIN S19); RN... 60 2e-09
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208564-921... 60 3e-09
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207164-921... 60 3e-09
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 60 3e-09
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 60 3e-09
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 59 4e-09
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 59 4e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 59 4e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RN... 59 4e-09
AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN RHYT... 59 5e-09
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,... 59 5e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS THALIA... 59 5e-09
AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 2e-08
AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 3e-08
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | EIF3G2; RNA binding / ... 56 3e-08
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 56 3e-08
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 56 4e-08
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 56 5e-08
AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing... 56 5e-08
AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 55 5e-08
AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 55 5e-08
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 5e-08
AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 5e-08
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 55 6e-08
AT3G56860.2 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2... 55 8e-08
AT3G56860.1 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2... 55 8e-08
AT3G56860.3 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2... 55 8e-08
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 8e-08
AT4G03110.1 | Symbols: | RNA-binding protein, putative | chr4:1... 55 8e-08
AT1G13690.1 | Symbols: ATE1 | ATE1; nucleic acid binding / nucle... 55 1e-07
AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT1G03457.1 | Symbols: | RNA-binding protein, putative | chr1:8... 54 2e-07
AT1G03457.2 | Symbols: | RNA-binding protein, putative | chr1:8... 54 2e-07
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 53 3e-07
AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 3e-07
AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing... 53 3e-07
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 52 7e-07
AT2G22090.1 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1... 52 7e-07
AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing... 52 7e-07
AT2G22090.2 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1... 52 8e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 51 1e-06
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi... 51 1e-06
AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucl... 51 1e-06
AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucl... 51 1e-06
AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotei... 51 1e-06
AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT5G07290.1 | Symbols: AML4 | AML4 (ARABIDOPSIS MEI2-LIKE 4); RN... 50 2e-06
AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding / n... 50 2e-06
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 50 2e-06
AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 50 2e-06
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 50 3e-06
AT1G22330.1 | Symbols: | RNA binding / nucleic acid binding / n... 49 4e-06
AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein... 49 5e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 5e-06
AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 6e-06
AT2G29580.1 | Symbols: | zinc finger (CCCH-type) family protein... 49 7e-06
>AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridylate binding
protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825
REVERSE
Length = 419
Score = 564 bits (1453), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/311 (85%), Positives = 280/311 (90%), Gaps = 1/311 (0%)
Query: 25 YHPAGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
YHP GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIH QVTEPLLQEVF+ TG VE CK
Sbjct: 26 YHP-GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCK 84
Query: 85 LIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 144
LIRKEKSSYGF+HY+DRRSA LAILSLNGRHLFGQPIKVNWAYASGQREDTS HFNIFVG
Sbjct: 85 LIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVG 144
Query: 145 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
DLSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AI+++TGKW
Sbjct: 145 DLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKW 204
Query: 205 LGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYV 264
LGSRQIRCNWATKGA VVELT+G SE+GKDT EAPENN QYTTVYV
Sbjct: 205 LGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYV 264
Query: 265 GNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILC 324
GNLAPEV+Q+DLHRHFH+LGAGVIEEVRVQRDKGFGFVRYSTH EAALAIQMGNT S L
Sbjct: 265 GNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLS 324
Query: 325 GKQIKCSWGSK 335
G+Q+KCSWGSK
Sbjct: 325 GRQMKCSWGSK 335
>AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridylate binding
protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825
REVERSE
Length = 416
Score = 555 bits (1430), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/311 (84%), Positives = 278/311 (89%), Gaps = 4/311 (1%)
Query: 25 YHPAGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
YHP GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIH QVTEPLLQEVF+ TG VE CK
Sbjct: 26 YHP-GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCK 84
Query: 85 LIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 144
LIRKEKSSYGF+HY+DRRSA LAILSLNGRHLFGQPIKVNWAYASGQREDTS HFNIFVG
Sbjct: 85 LIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVG 144
Query: 145 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
DLSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AI+++TGKW
Sbjct: 145 DLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKW 204
Query: 205 LGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYV 264
LGSRQIRCNWATKGA VVELT+G +GKDT EAPENN QYTTVYV
Sbjct: 205 LGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSG---DGKDTTNGEAPENNAQYTTVYV 261
Query: 265 GNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILC 324
GNLAPEV+Q+DLHRHFH+LGAGVIEEVRVQRDKGFGFVRYSTH EAALAIQMGNT S L
Sbjct: 262 GNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLS 321
Query: 325 GKQIKCSWGSK 335
G+Q+KCSWGSK
Sbjct: 322 GRQMKCSWGSK 332
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673027-4675950 FORWARD
Length = 427
Score = 544 bits (1401), Expect = e-155, Method: Compositional matrix adjust.
Identities = 255/311 (81%), Positives = 277/311 (89%), Gaps = 1/311 (0%)
Query: 25 YHPAGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
YHP G+LAPPQ+EP+PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQE+F+STG VE K
Sbjct: 31 YHP-GVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSK 89
Query: 85 LIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 144
LIRK+KSSYGF+HY+DRRSAALAILSLNGRHLFGQPIKVNWAYA+GQREDTS HFNIFVG
Sbjct: 90 LIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVG 149
Query: 145 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
DLSPEVTDATL+ FSV+ SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN++ GKW
Sbjct: 150 DLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 209
Query: 205 LGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYV 264
L SRQIRCNWATKGA VVELT G+SE+GK+T E PENN Q+TTVYV
Sbjct: 210 LSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYV 269
Query: 265 GNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILC 324
GNLAPEVTQLDLHR+FHALGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGNTQ L
Sbjct: 270 GNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLF 329
Query: 325 GKQIKCSWGSK 335
+QIKCSWG+K
Sbjct: 330 NRQIKCSWGNK 340
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 426
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 237/311 (76%), Positives = 273/311 (87%), Gaps = 1/311 (0%)
Query: 25 YHPAGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
YHP G++APPQ+EP+PSGNLPPGFDP+TCRSVY GNIHTQVTE LLQE+F+STG +E CK
Sbjct: 35 YHP-GVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCK 93
Query: 85 LIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 144
LIRK+KSSYGF+HY+DRR A++AI++LNGRH+FGQP+KVNWAYA+GQREDTS HFNIFVG
Sbjct: 94 LIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVG 153
Query: 145 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
DLSPEVTDA LF FS + SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN++ GKW
Sbjct: 154 DLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 213
Query: 205 LGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYV 264
+ SRQIRCNWATKGA VVELTNG+SE+G++ + +APENNPQ+TTVYV
Sbjct: 214 VSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYV 273
Query: 265 GNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILC 324
GNL+PEVTQLDLHR F+ LGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGN Q L
Sbjct: 274 GNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLF 333
Query: 325 GKQIKCSWGSK 335
+QI+CSWG+K
Sbjct: 334 SRQIRCSWGNK 344
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 430
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 237/315 (75%), Positives = 273/315 (86%), Gaps = 5/315 (1%)
Query: 25 YHPAGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
YHP G++APPQ+EP+PSGNLPPGFDP+TCRSVY GNIHTQVTE LLQE+F+STG +E CK
Sbjct: 35 YHP-GVMAPPQMEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCK 93
Query: 85 LIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 144
LIRK+KSSYGF+HY+DRR A++AI++LNGRH+FGQP+KVNWAYA+GQREDTS HFNIFVG
Sbjct: 94 LIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVG 153
Query: 145 DLSPEVTDATLFACFSVYPSCS----DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
DLSPEVTDA LF FS + SCS DARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN++
Sbjct: 154 DLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 213
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
GKW+ SRQIRCNWATKGA VVELTNG+SE+G++ + +APENNPQ+T
Sbjct: 214 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFT 273
Query: 261 TVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQ 320
TVYVGNL+PEVTQLDLHR F+ LGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGN Q
Sbjct: 274 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
Query: 321 SILCGKQIKCSWGSK 335
L +QI+CSWG+K
Sbjct: 334 PFLFSRQIRCSWGNK 348
>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (Arabidopsis thaliana
RNA-binding protein 47a); RNA binding |
chr1:18357236-18360150 REVERSE
Length = 445
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 153/292 (52%), Gaps = 23/292 (7%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKS----SYGFIHYYDRRSAALAI 108
++++VG++ + E L FS T V K+IR +++ YGF+ + R +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 109 LSLNGRHLFG--QPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFS-VY 162
S +G + QP ++NWA +++G++ + +IFVGDL+P+V+DA L F+ Y
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXX 222
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + SRQ+R AT
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATP--KRA 295
Query: 223 XXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHA 282
+ L G G + + ++ NN +T++VG L +VT+ DL + F
Sbjct: 296 AAYGQQNGSQALTLAGG---HGGNGSMSDGESNN---STIFVGGLDADVTEEDLMQPFSD 349
Query: 283 LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
G + V++ KG GFV+++ A AI GN + GK ++ SWG
Sbjct: 350 FGE--VVSVKIPVGKGCGFVQFANRQSAEEAI--GNLNGTVIGKNTVRLSWG 397
>AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518978-6521295 FORWARD
Length = 421
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 159/315 (50%), Gaps = 25/315 (7%)
Query: 29 GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK 88
++ PPQ P S + P + R++++G++ V E L FS TG + K+IR
Sbjct: 2 AMMHPPQ-PPQGSYHHPQTLE--EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 89 ----EKSSYGFIHYYDRRSAALAILSLNGRHLFGQPI--KVNWA-YASGQREDTSGHFNI 141
+ YGFI + +A + + NG + G + ++NWA + SGQ+ D +I
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSI 118
Query: 142 FVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
FVGDL+P+VTD L F V Y S A+V+ D TGRS+G+GFV F + + A+ ++
Sbjct: 119 FVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEM 178
Query: 201 TGKWLGSRQIRCNWAT--KGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQ 258
G + +R +R + AT K G V ++T ++ A PE++
Sbjct: 179 NGLYCSTRPMRISAATPKKNVG-------VQQQYVTKVTVPSAVAAPVQAYVAPPESDVT 231
Query: 259 YTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 318
TT+ V NL VT+ +L + F LG + V++ KG+G+V++ T A A+Q
Sbjct: 232 CTTISVANLDQNVTEEELKKAFSQLGEVIY--VKIPATKGYGYVQFKTRPSAEEAVQ--R 287
Query: 319 TQSILCGKQ-IKCSW 332
Q + G+Q ++ SW
Sbjct: 288 MQGQVIGQQAVRISW 302
>AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518978-6521295 FORWARD
Length = 425
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 158/315 (50%), Gaps = 21/315 (6%)
Query: 29 GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK 88
++ PPQ P S + P + R++++G++ V E L FS TG + K+IR
Sbjct: 2 AMMHPPQ-PPQGSYHHPQTLE--EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 89 ----EKSSYGFIHYYDRRSAALAILSLNGRHLFGQPI--KVNWA-YASGQREDTSGHFNI 141
+ YGFI + +A + + NG + G + ++NWA + SGQ+ D +I
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSI 118
Query: 142 FVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
FVGDL+P+VTD L F V Y S A+V+ D TGRS+G+GFV F + + A+ ++
Sbjct: 119 FVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEM 178
Query: 201 TGKWLGSRQIRCNWAT--KGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQ 258
G + +R +R + AT K G V +T ++ A PE++
Sbjct: 179 NGLYCSTRPMRISAATPKKNVG---VQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVT 235
Query: 259 YTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 318
TT+ V NL VT+ +L + F LG + V++ KG+G+V++ T A A+Q
Sbjct: 236 CTTISVANLDQNVTEEELKKAFSQLGEVIY--VKIPATKGYGYVQFKTRPSAEEAVQ--R 291
Query: 319 TQSILCGKQ-IKCSW 332
Q + G+Q ++ SW
Sbjct: 292 MQGQVIGQQAVRISW 306
>AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-binding protein
47B); RNA binding | chr3:6611398-6613823 REVERSE
Length = 435
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 16/291 (5%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAI 108
++++VG++ + E L FS TG V K+IR + +S YGF+ + R +A +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166
Query: 109 LSLNGRHL--FGQPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFS-VY 162
+ +G + QP ++NWA +++G++ + ++FVGDLSP+VTD L FS Y
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRY 226
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXX 222
PS A+V+ D TGRS+G+GFV F ++ + A+ ++ G + +RQ+R AT
Sbjct: 227 PSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIA 286
Query: 223 XXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHA 282
++ +G++ + ++ N T++VG + P+V DL + F
Sbjct: 287 NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN---ATIFVGGIDPDVIDEDLRQPFSQ 343
Query: 283 LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
G + V++ KG GFV+++ A AI+ N +++ ++ SWG
Sbjct: 344 FGE--VVSVKIPVGKGCGFVQFADRKSAEDAIESLNG-TVIGKNTVRLSWG 391
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding protein 45
(RBP45), putative | chr1:3914895-3917941 FORWARD
Length = 405
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 31/318 (9%)
Query: 28 AGLLAPPQIEPIPSGNLPPGFDPSTC---RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
AG PP P PP P+T R++++G++ + E L F+ TG + K
Sbjct: 33 AGAAPPPPQMWNPQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAK 92
Query: 85 LIRKEKSS----YGFIHYYDRRSAALAILSLNGRHLFGQP---IKVNWA-YASGQREDTS 136
+IR +++ YGFI + +A + + N + P ++NWA +SG + D S
Sbjct: 93 VIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS 152
Query: 137 GHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 195
+ IFVGDL+ +VTD L F + YPS A+V+ D+ TGR++G+GFV F ++ +
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 196 AINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPEN 255
A+ ++ G +R +R A G G + + +A +N
Sbjct: 213 AMTEMNGVPCSTRPMRIGPAASKKG----------------VTGQRDSYQSSAAGVTTDN 256
Query: 256 NPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 315
+P TTV+VG L VT L F G I V++ K GFV++S + A A++
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGE--IVHVKIPAGKRCGFVQFSEKSCAEEALR 314
Query: 316 MGNTQSILCGKQIKCSWG 333
M N L G ++ SWG
Sbjct: 315 MLNGVQ-LGGTTVRLSWG 331
>AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47C); RNA binding |
chr1:17424801-17427182 FORWARD
Length = 432
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 146/295 (49%), Gaps = 36/295 (12%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVE--GCKLIRKEKSS----YGFIHYYDRRSAALA 107
++++VG++H + E L F+S E K+IR + + YGF+ + A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 108 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-V 161
+ NG + QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGX 221
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP---- 276
Query: 222 XXXXXXXXXXXVVELTNGTSEEG--KDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRH 279
TNG ++G T PE + TT++VG L VT DL +
Sbjct: 277 -------------RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQP 323
Query: 280 FHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
F+ G I V++ KG GFV++ A A++ N + GKQ ++ SWG
Sbjct: 324 FNEFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLN--GTVIGKQTVRLSWG 374
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 28/187 (14%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSST-GLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIL 109
S++VG++ V++ LL E FS V+ K++ + YGF+ + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 110 SLNG--------RHLFGQPIKVNWAYASG---------QREDTSGHFNIFVGDLSPEVTD 152
+NG R P K N G + E + IFVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 153 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 212
L F+ + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 213 NWATKGA 219
+W A
Sbjct: 372 SWGRNPA 378
>AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding |
chr4:13554983-13557763 REVERSE
Length = 415
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 144/289 (49%), Gaps = 29/289 (10%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSY----GFIHYYDRRSAALAIL 109
RS+++G++ + E L VF TG K+IR +++ Y GFI + + +A +
Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139
Query: 110 SLNGRHLFG--QPIKVNWA-YASGQREDTSG-HFNIFVGDLSPEVTDATLFACF-SVYPS 164
+ NG + Q ++NWA +G+R G +FVGDL+P+VTD L F +VY S
Sbjct: 140 TYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSS 199
Query: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXX 224
A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ SR +R A
Sbjct: 200 VKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAAN------K 253
Query: 225 XXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG 284
+ T G S E++P TT++VG + VT+ DL F G
Sbjct: 254 KPLTMQPASYQNTQGNSG-----------ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFG 302
Query: 285 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
V V++ K GFV+Y+ A A A+ + N + L G+ I+ SWG
Sbjct: 303 ELV--HVKIPAGKRCGFVQYANRACAEQALSVLNG-TQLGGQSIRLSWG 348
>AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-binding protein
45A); RNA binding | chr5:22295412-22298126 FORWARD
Length = 387
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 29/293 (9%)
Query: 51 STCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK----EKSSYGFIHYYDRRSAAL 106
S +S+++G++ + E + VF+ +G K+IR + YGFI + A
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 107 AILSLNGRHLFG--QPIKVNWAYASG--QREDTSG-HFNIFVGDLSPEVTDATLFACF-S 160
+ + NG + Q ++NWA A +R T G IFVGDL+PEVTD L F +
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKN 176
Query: 161 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 220
VY S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G++ +R +R A
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAAN--- 233
Query: 221 XXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 280
+ + T G + A +N+P TT++VG L VT +L F
Sbjct: 234 ---KNALPMQPAMYQNTQGAN----------AGDNDPNNTTIFVGGLDANVTDDELKSIF 280
Query: 281 HALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
G + V++ K GFV+Y+ A A A+ + N + L G+ I+ SWG
Sbjct: 281 GQFGE--LLHVKIPPGKRCGFVQYANKASAEHALSVLNG-TQLGGQSIRLSWG 330
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding protein 45
(RBP45), putative | chr1:3914895-3917301 FORWARD
Length = 306
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 30/290 (10%)
Query: 28 AGLLAPPQIEPIPSGNLPPGFDPSTC---RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
AG PP P PP P+T R++++G++ + E L F+ TG + K
Sbjct: 33 AGAAPPPPQMWNPQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAK 92
Query: 85 LIRKEKSS----YGFIHYYDRRSAALAILSLNGRHLFGQP---IKVNWA-YASGQREDTS 136
+IR +++ YGFI + +A + + N + P ++NWA +SG + D S
Sbjct: 93 VIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS 152
Query: 137 GHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 195
+ IFVGDL+ +VTD L F + YPS A+V+ D+ TGR++G+GFV F ++ +
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 196 AINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPEN 255
A+ ++ G +R +R A G G + + +A +N
Sbjct: 213 AMTEMNGVPCSTRPMRIGPAASKKG----------------VTGQRDSYQSSAAGVTTDN 256
Query: 256 NPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYS 305
+P TTV+VG L VT L F G I V++ K GFV++S
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGE--IVHVKIPAGKRCGFVQFS 304
>AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-binding protein
47C'); RNA binding | chr1:17432682-17434805 FORWARD
Length = 434
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 144/295 (48%), Gaps = 36/295 (12%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVE--GCKLIRKEKSS----YGFIHYYDRRSAALA 107
++++VG++ + E L F+S E K+IR + + YGF+ + A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 108 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-V 161
+ NG + QP ++NWA +++G++ E+ +IFVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGX 221
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP---- 278
Query: 222 XXXXXXXXXXXVVELTNGTSEEG--KDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRH 279
TNG ++G + E + TT++VG L VT DL +
Sbjct: 279 -------------RKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQP 325
Query: 280 FHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
F G I V++ KG GFV++ A A++ N + GKQ ++ SWG
Sbjct: 326 FSEFGE--IVSVKIPVGKGCGFVQFVNRPNAEEALEKLN--GTVIGKQTVRLSWG 376
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSST-GLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIL 109
S++VG++ V++ LL E FS V+ K++ + YGF+ + D A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 110 SLNG--------RHLFGQPIKVNWAYASG---------QREDTSGHFNIFVGDLSPEVTD 152
+NG R P K N G + E + + IFVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 153 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 212
L FS + ++ +G GFV F N+ +A+ A+ L G +G + +R
Sbjct: 320 EDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Query: 213 NWATKGA 219
+W A
Sbjct: 374 SWGRNPA 380
>AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo defective 2444);
RNA binding / nucleic acid binding / nucleotide binding
| chr2:8031554-8033517 REVERSE
Length = 363
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKE----KSSYGFIHYYDRRSAALAILS 110
+VYVG + Q++E LL E+F G V + + +YGFI Y A AI
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDAR 169
LN L G+PI+VN A + D N+F+G+L P+V + L+ FS + S+ +
Sbjct: 86 LNMIKLHGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 170 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 217
+M D TG SRGFGF+S+ + + + +AI +TG++L +RQI ++A K
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK 191
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING
2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 629
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 128/273 (46%), Gaps = 42/273 (15%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCK----LIRKEKSSYGFIHYYDRRSAALAILS 110
S+YVG++ VT+ L + F G V + L+ + YG++++ + + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 111 LNGRHLFGQPIKVNWAY--ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 168
LN L+G+PI+V +++ S +R SG NIF+ +L + L FS + +
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 169 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXX 228
+V D +G+S+G+GFV + N++ AQ AI L G L +Q+ +
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR----------- 201
Query: 229 XXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG---A 285
+ +D+ N+ ++T VYV NLA T DL F G +
Sbjct: 202 -------------RQERDSTANKT-----KFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 286 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 318
V+ + + KGFGFV + +AA A++ N
Sbjct: 244 AVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 128/297 (43%), Gaps = 41/297 (13%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLI---RKEKSSYGFIHYYDR 101
DPS RS +++ N+ + L + FSS G + CK+ + YGF+ Y +
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF---NIFVGDLSPEVTDATLFAC 158
SA AI LNG L + + V +R+ T+ N++V +L+ TD L
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
F Y + A VM D + G+S+GFGFV+F N DA A+ L G ++ A K
Sbjct: 235 FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Query: 219 AGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHR 278
+ EL + K+ A + Q + +YV NL P ++ L
Sbjct: 294 S-----------ERETELRVRYEQNLKEAA------DKFQSSNLYVKNLDPSISDEKLKE 336
Query: 279 HFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKC 330
F G + +V RD KG GFV ++T EA A+ S L GK I+
Sbjct: 337 IFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM------SQLSGKMIES 385
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSAALAILSL 111
+VYV N+ T+ L+ F G + +++ + +GF+++ + AA A+ SL
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 275
Query: 112 NGRHLFGQPIKVNWAYASGQRE---------------DTSGHFNIFVGDLSPEVTDATLF 156
NG + V A +RE D N++V +L P ++D L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS + + + ++VM D G S+G GFV+F ++A A++ L+GK + S+ + A
Sbjct: 336 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Query: 217 K 217
+
Sbjct: 395 R 395
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 39/228 (17%)
Query: 106 LAILSLNGRHLFGQPIKVNWAYAS--GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 163
+A + L G+ G V A A+ G G+ +++VGDL VTD+ LF F
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 164 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXX 223
+ RV D T RS G+G+V+F N QDA AI +L L + IR ++
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSH------- 113
Query: 224 XXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHAL 283
+D + + N +++ NL + LH F +
Sbjct: 114 ---------------------RDPSVRRSGAGN-----IFIKNLDESIDHKALHDTFSSF 147
Query: 284 GAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQI 328
G V +V V + KG+GFV+Y+ A AI+ N +L KQ+
Sbjct: 148 GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGM-LLNDKQV 194
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding / translation initiation factor |
chr1:8055599-8058799 FORWARD
Length = 660
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS---YGFIHYYDRRSAALAILSL 111
S+Y G++ +VTE L ++F V ++ R + Y +I++ + A A+ +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 171
N LF +PI++ + SG NIF+ +L + + LF FS + + +V
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 172 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXX 231
D TGRS+G+GFV F ++ AQ+AI+ L G + +Q+ +
Sbjct: 169 MD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR-------------- 213
Query: 232 XVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEV 291
E +D T P++T VYV NL E+ + +L + F GVI
Sbjct: 214 --------RQERARDENT-----PTPRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSA 258
Query: 292 RVQRDKG-----FGFVRYSTHAEAALAIQMGNTQSI 322
V RD+ FGFV + AA A++ N S+
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 115/289 (39%), Gaps = 33/289 (11%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKL---IRKEKSSYGFIHYYDR 101
DPST S +++ N+ + L E FSS G + CK+ + YGF+ +
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186
Query: 102 RSAALAILSLNGRHLFGQPIKV-----NWAYASGQREDTSGHFNIFVGDLSPEVTDATLF 156
SA AI LNG + + + V A + T N++V +L E+ + L
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F + S A VM DQ +G SR FGFV+F + A SA+ + G LG + A
Sbjct: 247 KTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305
Query: 217 KGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDL 276
K + EL +E + Q +Y+ NL V L
Sbjct: 306 KKSEREE-----------ELRRKFEQERINRFEKS------QGANLYLKNLDDSVDDEKL 348
Query: 277 HRHFHALGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTQSI 322
F G +V + +GFGFV YS EA A+ N + I
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMI 397
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS---YGFIHYYDRRSAALAILSL 111
+VYV N+ ++ E L++ F G++ ++R + + +GF+++ +AA A+ +
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 112 NGRHLFGQPIKVNWAYASGQRED---------------TSGHFNIFVGDLSPEVTDATLF 156
NG L + V A +RE+ S N+++ +L V D L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS Y + + ++VM + + G SRGFGFV++ N ++A A++++ GK +G + + A
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 217 K 217
+
Sbjct: 409 R 409
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 133 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 192
+ T + +++ GDL P+VT+A LF F + RV DQ RS G+ +++F N D
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPND 101
Query: 193 AQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEA 252
A A+ L L R IR + L+N +D +T +
Sbjct: 102 AYRAMEALNYTPLFDRPIR----------------------IMLSN------RDPSTRLS 133
Query: 253 PENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQ---RDKGFGFVRYSTHAE 309
+ N +++ NL + L F + G + +V + R KG+GFV++
Sbjct: 134 GKGN-----IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEES 188
Query: 310 AALAIQMGNTQSILCGKQI 328
A AI N ++ KQ+
Sbjct: 189 AQAAIDKLNGM-LMNDKQV 206
>AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA
binding / translation initiation factor |
chr3:5558676-5560993 REVERSE
Length = 537
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 37/277 (13%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS--YGFIHYYDRRSAALAILSLN 112
++YV N+ + +T L+ +F G + CK++ + S +GF+ + +SA A +L+
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 113 GRHLFGQPIKVNWAYASGQREDTSGH---FNIFVGDLSPEVTDATLFACFSVYPSCSDAR 169
G ++G+ + V +R +G+ N++V +L VTD L FS Y + S
Sbjct: 173 GSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVV 232
Query: 170 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXX 229
VM D GRSRGFGFV+F N ++A+ A+ L G LGS+++ A K
Sbjct: 233 VMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK------------ 279
Query: 230 XXXVVELTNGTSEEGKDTATNEAPEN-----NPQYTTVYVGNLAPEVTQLDLHRHFHALG 284
+E ++ + +N N +++ +YV NL+ + + L F G
Sbjct: 280 -----------KDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYG 328
Query: 285 AGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 318
V +V R KGFGFV +S E+ A + N
Sbjct: 329 QIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 123/285 (43%), Gaps = 50/285 (17%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK----EKSSYGFIHYYDRRSAALAILS 110
S+YVG++ VTE L + FS V L R + Y +I++ SA+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 111 LNGRHLFGQPIKVNWAY--ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 168
LN L G+ +++ W+ + +R +G N++V +L +T + L F + S
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 169 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXX 228
+V+ ++ G+S+GFGFV F +Q A SA + L G + +++
Sbjct: 142 KVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL------------------ 181
Query: 229 XXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVI 288
V + N KD A N T VYV NL VT LH F G +
Sbjct: 182 ---FVAKFIN------KDERA--AMAGNQDSTNVYVKNLIETVTDDCLHTLFSQY--GTV 228
Query: 289 EEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILCGKQI 328
V V RD +GFGFV + A A++ LCG Q+
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES------LCGLQL 267
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSAALAILSL 111
+VYV N+ VT+ L +FS G V ++R +GF+++ + +A A+ SL
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 112 NGRHLFGQPIKVNWAYASGQREDT-----SGHF---------NIFVGDLSPEVTDATLFA 157
G L + + V A +R + S +F N++V +LS + + L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 158 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 210
F Y A+VM + GRS+GFGFV F N ++++ A L G + + I
Sbjct: 323 IFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
>AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN
8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 671
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 127/295 (43%), Gaps = 43/295 (14%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDR 101
DPS +S +++ N+ + L E FS+ G + CK+ + YGF+ Y
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTD 183
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGH----FNIFVGDLSPEVTDATL-- 155
+A AI LNG L + + V QR D SG N++V +LS ++D L
Sbjct: 184 EAAQGAIDKLNGMLLNDKQVYVGPFVHKLQR-DPSGEKVKFTNVYVKNLSESLSDEELNK 242
Query: 156 -FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 214
F F V SC V+ G+S+GFGFV+F N DA A++ L GK ++
Sbjct: 243 VFGEFGVTTSC----VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGK 298
Query: 215 ATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQL 274
A K + EL + K+ A + Q + +YV NL VT
Sbjct: 299 AQKKSERE-----------TELKQKFEQSLKEAA------DKSQGSNLYVKNLDESVTDD 341
Query: 275 DLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILC 324
L HF G I +V RD +G GFV +ST EA AI N + I+
Sbjct: 342 KLREHFAPF--GTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT 394
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 121/277 (43%), Gaps = 42/277 (15%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIR----KEKSSYGFIHYYDRRSAALAILS 110
S+YVG++ VT+ L E F+ G V ++ R + YG+++Y + A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
LN L G+ I+V ++ SG NIF+ +L + L FS + +V
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLR-KSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 171 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXX 230
D +G+S+G+GFV + + AQ AI+ L G L +Q+
Sbjct: 165 AVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG----------------- 206
Query: 231 XXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEE 290
V +L S E ++T VYV NL+ ++ +L++ F GV
Sbjct: 207 PFVHKLQRDPSGE------------KVKFTNVYVKNLSESLSDEELNKVFGEF--GVTTS 252
Query: 291 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSI 322
+ RD KGFGFV + +AA A+ N ++
Sbjct: 253 CVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 49 DPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDR 101
DPS + +VYV N+ +++ L +VF G+ C ++R + +GF+++ +
Sbjct: 215 DPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENS 274
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQRE---------------DTSGHFNIFVGDL 146
AA A+ +LNG+ + V A +RE D S N++V +L
Sbjct: 275 DDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNL 334
Query: 147 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 206
VTD L F+ + + + +VM D +G SRG GFV+F ++A AI ++ GK +
Sbjct: 335 DESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 207 SRQIRCNWATK 217
++ + A +
Sbjct: 394 TKPLYVALAQR 404
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 137 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 196
G +++VGDL VTD+ LF F+ RV D T RS G+G+V++ QDA A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 197 INDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENN 256
+N+L L R IR ++ +D + ++ N
Sbjct: 103 LNELNFMALNGRAIRVMYSV----------------------------RDPSLRKSGVGN 134
Query: 257 PQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALA 313
+++ NL + LH F A G + +V V + KG+GFV+Y T A A
Sbjct: 135 -----IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGA 189
Query: 314 IQMGNTQSILCGKQI 328
I N +L KQ+
Sbjct: 190 IDKLNGM-LLNDKQV 203
>AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47C); RNA binding |
chr1:17424801-17426114 FORWARD
Length = 310
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 12/175 (6%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVE--GCKLIRKEKSS----YGFIHYYDRRSAALA 107
++++VG++H + E L F+S E K+IR + + YGF+ + A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 108 ILSLNGRHL--FGQPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-V 161
+ NG + QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G SR +R AT
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
>AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING PROTEIN
4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 662
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 120/279 (43%), Gaps = 31/279 (11%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSAALAILSL 111
+++V N+ V L E FS G + CK+ + YGF+ + SA AI L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 112 NGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 168
NG+ L + I V +RE D N++V +LS TD L F Y S S A
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSA 254
Query: 169 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXX 228
VM D G+SR FGFV+F N +DA A+ L GK ++ A K +
Sbjct: 255 VVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKS--------- 304
Query: 229 XXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVI 288
+EL+ E+G N+ N +YV NL VT L F G I
Sbjct: 305 --ERELELSR-RYEQGSSDGGNKFDGLN-----LYVKNLDDTVTDEKLRELFAEF--GTI 354
Query: 289 EEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSI 322
+V RD KG GFV +S +EA+ + N + +
Sbjct: 355 TSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMV 393
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 42/273 (15%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILS 110
S+YVG++ VT+ L + F+ V ++ R ++ YG+++Y + A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
LN +L G+ I++ ++ SG N+FV +L V + TL FS + +V
Sbjct: 107 LNYSYLNGKMIRITYSSRD-SSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 171 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXX 230
D G+SRG+GFV F + A++AI L GK L +QI +
Sbjct: 166 ATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLR------------- 211
Query: 231 XXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEE 290
+E +++A ++ ++T VYV NL+ T +L F G+ I
Sbjct: 212 -----------KEERESAADKM-----KFTNVYVKNLSEATTDDELKTTFGQYGS--ISS 253
Query: 291 VRVQRD-----KGFGFVRYSTHAEAALAIQMGN 318
V RD + FGFV + +AA A++ N
Sbjct: 254 AVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSAALAILSL 111
+VYV N+ T+ L+ F G + ++R + +GF+++ + AA A+ +L
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 112 NGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVTDATLF 156
NG+ + V A +RE D F N++V +L VTD L
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F+ + + + +VM D +G S+G GFV+F +A +N++ GK +G + + A
Sbjct: 346 ELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Query: 217 K 217
+
Sbjct: 405 R 405
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5); RNA
binding / poly(A) binding / translation initiation
factor | chr1:26990777-26993447 REVERSE
Length = 668
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 125/274 (45%), Gaps = 35/274 (12%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEG---CKLIRKEKSSYGFIHYYDRRSAALAILSL 111
S+YVG++ V E L ++F+ V C+ + Y ++++ + A+ A+ SL
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 171
N + +PI++ + SG N+F+ +L + + L+ FS + + +V
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 164
Query: 172 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXX 231
D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ +
Sbjct: 165 MD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR-------------- 209
Query: 232 XVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG---AGVI 288
+D A +E+ P +T VYV NL E+T +L + F G + V+
Sbjct: 210 ------------RQDRARSES-GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVV 256
Query: 289 EEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSI 322
+ + + FGFV + + AA+A++ N S+
Sbjct: 257 MKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 290
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEK---SSYGFIHYYDRRSAALAILSL 111
+VYV N+ ++T+ L++ F G + +++ + S+GF+++ +AA+A+ +
Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 112 NGRHLFGQPIKVNWAYASGQREDT---------SGHF------NIFVGDLSPEVTDATLF 156
NG L + V A RE+ F N+++ +L V D L
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS Y + + +VM + + G SRGFGFV++ N ++A A+ ++ GK +G + + A
Sbjct: 346 EMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
Query: 217 K 217
+
Sbjct: 405 R 405
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 38/192 (19%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+++VGDL P V ++ L F+ + RV D T RS G+ +V+F N +DA A+
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMES 104
Query: 200 LTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQY 259
L + R IR + L+N +D +T + + N
Sbjct: 105 LNYAPIRDRPIR----------------------IMLSN------RDPSTRLSGKGN--- 133
Query: 260 TTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVR---VQRDKGFGFVRYSTHAEAALAIQM 316
V++ NL + L+ F + G + +V V R KG+GFV++ A AI
Sbjct: 134 --VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDK 191
Query: 317 GNTQSILCGKQI 328
N +L KQ+
Sbjct: 192 LNGM-LLNDKQV 202
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766223-12767952 REVERSE
Length = 329
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 49 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSA 104
+PS ++VGN+ V L +F G VE ++I ++ +GF+ A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 105 ALAILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACF 159
A+ N L G+ + VN A G R + + F ++VG+L +V + L F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 160 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 217
S + +ARV++D++TGRSRGFGFV+ + + AI+ L G+ L R IR N A +
Sbjct: 265 SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15634980-15636331 REVERSE
Length = 289
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKE----KSSYGFIHYYDRRSAALAILSL 111
++VGN+ V L ++F S G VE ++I + +GF+ A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 112 NGRHLFGQPIKVNWAYASGQRED------------------------TSGHFNIFVGDLS 147
NG L G+P++VN +RED ++VG+LS
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 148 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 207
V D L + FS +ARV++D+ +GRS+GFGFV++ + Q+ Q+AI L G L
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 208 RQIRCNWA 215
RQIR + A
Sbjct: 273 RQIRVSEA 280
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 79/200 (39%), Gaps = 13/200 (6%)
Query: 136 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 195
S +FVG+L V A L F + V++D+ TGRSRGFGFV+ + + ++
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 196 AINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPEN 255
A G L R +R N +G G A
Sbjct: 148 AAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAG------ 201
Query: 256 NPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRD----KGFGFVRYSTHAEAA 311
VYVGNL+ V + L F G V V RD KGFGFV Y + E
Sbjct: 202 --SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 312 LAIQMGNTQSILCGKQIKCS 331
AI+ + L G+QI+ S
Sbjct: 260 NAIKSLDGAD-LDGRQIRVS 278
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20452677-20453965 REVERSE
Length = 289
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 47 GF-DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDR 101
GF +P ++VGN+ V L +F G VE ++I + +GF+
Sbjct: 105 GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV 164
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLF 156
A A+ N + G+ + VN A G R + F I+VG+L +V L
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS + DARV+ D++TGRSRGFGFV N+ + AI L G+ L R I+ N A
Sbjct: 225 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Query: 217 K 217
+
Sbjct: 285 E 285
>AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA
binding / translation initiation factor |
chr2:15361476-15364398 REVERSE
Length = 609
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 52/277 (18%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILS 110
S+YVG++H VTE +L + F+ + +L + S YG+ ++ R+ A LAI
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 111 LNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATL---FACFSVYPSCS 166
N L G+ I+V W+ A R + G N+FV +L VT+A L F F SC
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG--NVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 167 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXX 226
A + + G+SRG+GFV F + A +AI L + ++I
Sbjct: 143 VATL----EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV-------------- 184
Query: 227 XXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAG 286
GK + + +YT +Y+ NL +V++ L F G
Sbjct: 185 -----------------GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK- 226
Query: 287 VIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 318
I + + +D +G+ FV + +A A + N
Sbjct: 227 -IVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 29/270 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS---YGFIHYYDRRSAALAILSL 111
+V+V N+ VT +LQ++F G + CK+ E YGF+ + +A AI +L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 112 NGRHLFGQPIKV-NWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
N + + I V + + + + + N+++ +L +V++ L F+ + +
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 171 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXX 230
D+ RG+ FV+F N +DA+ A + G GS+ + A K A
Sbjct: 233 AKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKA--------ERE 283
Query: 231 XXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEE 290
+ E EE K A + + +YV N+ VT+ +L +HF G I
Sbjct: 284 QLLREQFKEKHEEQKMIA---------KVSNIYVKNVNVAVTEEELRKHFSQ--CGTITS 332
Query: 291 VRVQRD-----KGFGFVRYSTHAEAALAIQ 315
++ D KGFGFV +ST EA A++
Sbjct: 333 TKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKS---SYGFIHYYDRRSAALAILSL 111
++Y+ N+ V+E LL+E F+ G + + + E Y F+++ + A A ++
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 112 NGRHLFGQPIKVNWAYASGQRED---------------TSGHFNIFVGDLSPEVTDATLF 156
NG + + V A +RE + NI+V +++ VT+ L
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS + + ++M D+K G+S+GFGFV F ++A A+ G+ + + A
Sbjct: 322 KHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 217 K 217
K
Sbjct: 381 K 381
>AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); RNA
binding / translation initiation factor |
chr1:12433356-12434735 REVERSE
Length = 407
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 27/284 (9%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEK---SSYGFIHYYDR 101
DPS S V+V N+ + L ++FS+ G V CK+ R YGF+ +Y
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSD 81
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV 161
S A NG + Q I V + GQ + + N++V +L TDA L F
Sbjct: 82 LSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGE 141
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGX 221
+ + A VM D + G+SR FGFV+F + A +AI + G + +++ A +
Sbjct: 142 FGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR 200
Query: 222 XXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 281
+ +D T + +YV NL V L F
Sbjct: 201 TEDLKAKFELEKII---------RDMKTRKG-------MNLYVKNLDDSVDNTKLEELFS 244
Query: 282 ALGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTQSI 322
G +V V + KG GFV +ST EA+ A+ N + +
Sbjct: 245 EFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMV 288
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSAALAILSL 111
+VYV N+ T+ L+ +F G + +++ + +GF+++ +A AI +
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 112 NGRHLFGQPIKVNWAYASGQR-EDTSGHF---------------NIFVGDLSPEVTDATL 155
NG + + + V A R ED F N++V +L V + L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 156 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
FS + + + +VM G S+G GFV F ++A A+ + GK +G++ I + A
Sbjct: 240 EELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 253
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 18/189 (9%)
Query: 45 PPGFDPST--CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKS----SYGFIHY 98
P DPS+ R VY+GNI VT L ++ G VE +++ + S +GF
Sbjct: 65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
Query: 99 YDRRSAALAILSLNGRHLFGQPIKVNWA---YASG------QREDTS---GHFNIFVGDL 146
A + LNG + G+ IKVN AS Q ED++ + ++VG+L
Sbjct: 125 KSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 147 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 206
+ VT L FS A+V T +S GFGFV+F +++D ++AI L L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 207 SRQIRCNWA 215
++IR N A
Sbjct: 245 GQKIRVNKA 253
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+++G++ VT+ L + + +VM+D+ +GRSR FGF + ++ +DA + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
G + R+I+ N K +L+ SE D+A ++P
Sbjct: 138 NGNTVEGREIKVNITEKPIASSP-----------DLSVLQSE---DSAFVDSPYK----- 178
Query: 261 TVYVGNLAPEVTQLDLHRHFHALGAGVIEEV-RV---QRDKGFGFVRYSTHAEAALAIQM 316
VYVGNLA VT+ L F G V +V RV + GFGFV +S+ + AI
Sbjct: 179 -VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 317 GNTQSILCGKQIKC 330
N S+L G++I+
Sbjct: 238 LN-NSLLEGQKIRV 250
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 253
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 18/189 (9%)
Query: 45 PPGFDPST--CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKS----SYGFIHY 98
P DPS+ R VY+GNI VT L ++ G VE +++ + S +GF
Sbjct: 65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
Query: 99 YDRRSAALAILSLNGRHLFGQPIKVNWA---YASG------QREDTS---GHFNIFVGDL 146
A + LNG + G+ IKVN AS Q ED++ + ++VG+L
Sbjct: 125 KSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 147 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 206
+ VT L FS A+V T +S GFGFV+F +++D ++AI L L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 207 SRQIRCNWA 215
++IR N A
Sbjct: 245 GQKIRVNKA 253
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+++G++ VT+ L + + +VM+D+ +GRSR FGF + ++ +DA + + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
G + R+I+ N K +L+ SE D+A ++P
Sbjct: 138 NGNTVEGREIKVNITEKPIASSP-----------DLSVLQSE---DSAFVDSPYK----- 178
Query: 261 TVYVGNLAPEVTQLDLHRHFHALGAGVIEEV-RV---QRDKGFGFVRYSTHAEAALAIQM 316
VYVGNLA VT+ L F G V +V RV + GFGFV +S+ + AI
Sbjct: 179 -VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 317 GNTQSILCGKQIKC 330
N S+L G++I+
Sbjct: 238 LN-NSLLEGQKIRV 250
>AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 329
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 18/180 (10%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILSL 111
+YVGN+ +T L ++F G V +++ + + +GF+ A A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 112 NGRHLFGQPIKVNW----------AYASGQREDTSGHFN----IFVGDLSPEVTDATLFA 157
N + G+ +KVN+ + R++ + + ++ G+L +T L
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 158 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 217
F P A+V++++ TGRSRGFGF+SF + ++ QSA+ + G + R +R N A++
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASE 297
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++VG+L +T + L F + D ++++D+ T RSRGFGFV+ + ++A+ A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
+G R ++ N+ E+ G E T + NN Y
Sbjct: 178 NSSQIGGRTVKVNFP-------------------EVPRGGENEVMRTKIRD---NNRSYV 215
Query: 261 ----TVYVGNLAPEVTQLDLHRHFH----ALGAGVIEEVRVQRDKGFGFVRYST--HAEA 310
VY GNL +T L F LGA VI E R +GFGF+ + + + ++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 311 ALAIQMG 317
ALA G
Sbjct: 276 ALATMNG 282
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606762-8607677 REVERSE
Length = 136
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG LS D++L F+ + ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 201 TGKWLGSRQIRCNWATK 217
GK L RQIR N AT+
Sbjct: 97 DGKELNGRQIRVNLATE 113
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606762-8607677 REVERSE
Length = 136
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG LS D++L F+ + ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 201 TGKWLGSRQIRCNWATK 217
GK L RQIR N AT+
Sbjct: 97 DGKELNGRQIRVNLATE 113
>AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:1212065-1213795 REVERSE
Length = 245
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 51/74 (68%)
Query: 139 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 198
+ +F GDL EV D L F+ +P+ + A+V+ D++TG+++G+GFVSF N D +A+
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 199 DLTGKWLGSRQIRC 212
++ GK++G+R I+
Sbjct: 197 EMNGKYVGNRPIKL 210
>AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr1:22093678-22094540 REVERSE
Length = 258
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 42 GNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVF--SSTGLVEGCKLIRKEKSSYGFIHYY 99
GNLP D +T + I P L EV TG G + F+
Sbjct: 90 GNLPYNVDSAT-----LAQIIQDFANPELVEVLYNRDTGQSRG----------FAFVTMS 134
Query: 100 DRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLF 156
+ + I +L+G G+ +KVN+A ++ +FVG+LS VT +L
Sbjct: 135 NVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLA 194
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
F ARV++D TGRSRG+GFV + ++ + ++A+ L G L R IR N A
Sbjct: 195 GAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
>AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 144
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWAT 216
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 153
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWAT 216
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2
(GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA
binding / double-stranded DNA binding / single-stranded
DNA binding | chr4:8021314-8022065 FORWARD
Length = 158
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWAT 216
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 129
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 201 TGKWLGSRQIRCNWAT 216
GK L R IR N A
Sbjct: 97 DGKELNGRHIRVNPAN 112
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192461-1195413 FORWARD
Length = 310
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
IFVG LSPEVTD L FS + D ++M ++ TGRSRGFGF++F +++ +I +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 200 LTGKWLGSRQIRCNWA 215
+ G+ G R I N A
Sbjct: 68 MHGRDFGDRVISVNRA 83
>AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr2:14156085-14157435
FORWARD
Length = 404
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILSL 111
+++G I E LL+E FS+ G V ++R++ + +GF+ + D A + +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD--PAVIDRVLQ 65
Query: 112 NGRHLFGQPIKVNWAYASGQREDT--SGHFN---------------IFVGDLSPEVTDAT 154
+ H+ + + V A + ++ SG FN IFVG L P +T
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 155 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA----QSAINDLTGKWL 205
A F Y SDA +M DQ T R RGFGFVSF ++ +DL GK +
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
>AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022601-8023162 FORWARD
Length = 87
Score = 66.6 bits (161), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++VG+LSP TD L FS Y + DA VM D+ T RSRGFGFV++ + +A++A++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 201 TGKWLGSRQI 210
GK L R++
Sbjct: 65 DGKELNGRRV 74
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7342869-7347052 REVERSE
Length = 561
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 43 NLPPGFDPS-TCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLI----RKEKSSYGFIH 97
+ P DP R+V+ I + TE + E FS G V ++I + G++
Sbjct: 170 KVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVE 229
Query: 98 YYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTS---------------GHFNIF 142
+YD S +AI +L+G+ L GQP+ V + A ++ G ++
Sbjct: 230 FYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLY 288
Query: 143 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 202
VG+L +++ L F + S +V D+ TG +GFGFV F +DA++A+N L G
Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALN-LNG 346
Query: 203 KW-LGSRQIRCNWAT 216
+ + R I+ + T
Sbjct: 347 QLEIAGRAIKVSAVT 361
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); ATP binding / RNA binding |
chr5:24560870-24562152 FORWARD
Length = 309
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G ++ + + +L F+ Y D RV+ D++TGRSRGFGFV+F + + A SAI L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 201 TGKWLGSRQIRCNWA 215
G+ L R ++ N+A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U) binding |
chr3:19819738-19821423 REVERSE
Length = 342
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ + Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 201 TGKWLGSRQIRCNWA 215
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U) binding |
chr3:19819738-19821423 REVERSE
Length = 342
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++VG+LS V D L F+ +ARV++D+ +GRS+GFGFV+ + Q+ Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 201 TGKWLGSRQIRCNWA 215
G L RQIR + A
Sbjct: 319 NGADLDGRQIRVSEA 333
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231179-8232785
FORWARD
Length = 411
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 25/174 (14%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFI--------------- 96
++VG I + E L+E F++ G V ++R + + +GF+
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 97 HYYDRRSAALA-ILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATL 155
H D R + +S + + G+ +N + +SG + + IFVG L P +TD
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGG-DAYNKTKKIFVGGLPPTLTDEEF 126
Query: 156 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 205
F VY +D +M+DQ T R RGFGFVSF ++ S + +DL+GK +
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 289
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IFVG +S + L FS Y DA+++ D++TGRSRGF FV+F + ++A +A+ L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 201 TGKWLGSRQIRCNWATK 217
G+ L R+IR N+AT+
Sbjct: 95 DGQDLHGRRIRVNYATE 111
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081646-3085179 REVERSE
Length = 527
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 16/190 (8%)
Query: 46 PGFDPS-TCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYD 100
P DP R+V+ + + TE + E FS G V +LI S G+I +YD
Sbjct: 159 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 101 RRSAALAILSLNGRHLFGQPIKVNWAYAS---GQREDTS------GHFNIFVGDLSPEVT 151
S +AI +L+G+ GQP+ V + A Q T+ ++VG+L ++
Sbjct: 219 VMSVPMAI-ALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMS 277
Query: 152 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQI 210
+ L F + ++ D +TG+ +GFGF+ F + +++A L GK + R I
Sbjct: 278 ELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTI 337
Query: 211 RCNWATKGAG 220
+ + + G
Sbjct: 338 KVSSVSDHIG 347
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555034-2555829 REVERSE
Length = 143
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+F+G LS V + +L FS + ++ R+ +D+ +GRSRGFGFV F + DA SA +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 200 LTGKWLGSRQIRCNWATK 217
+ GK L R +R ++A +
Sbjct: 102 MDGKGLLGRPLRISFALE 119
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 92
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 139 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 198
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 199 DLTGKWLGSRQIRCNWA-TKGAG 220
++ GK L R I N A ++G+G
Sbjct: 66 EMNGKELDGRVITVNEAQSRGSG 88
>AT2G43410.1 | Symbols: FPA | FPA; RNA binding |
chr2:18026397-18030989 REVERSE
Length = 858
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLN 112
C+S++VG I V++ L+E FS G +E + +R+ K++ FI YY+ AL S+N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYEMDD-ALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------FNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FR+ ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWAT 216
+ +I+ ++
Sbjct: 269 FNNPRIKIMYSN 280
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A +L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 214
KT F+ + DA A + GK +G +R ++
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDF 163
>AT2G43410.4 | Symbols: FPA | FPA; RNA binding |
chr2:18026397-18030989 REVERSE
Length = 901
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLN 112
C+S++VG I V++ L+E FS G +E + +R+ K++ FI YY+ AL S+N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYE-MDDALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------FNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FR+ ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWAT 216
+ +I+ ++
Sbjct: 269 FNNPRIKIMYSN 280
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A +L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 214
KT F+ + DA A + GK +G +R ++
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDF 163
>AT2G43410.3 | Symbols: FPA | FPA; RNA binding |
chr2:18026397-18030989 REVERSE
Length = 901
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLN 112
C+S++VG I V++ L+E FS G +E + +R+ K++ FI YY+ AL S+N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYE-MDDALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------FNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FR+ ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWAT 216
+ +I+ ++
Sbjct: 269 FNNPRIKIMYSN 280
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A +L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 214
KT F+ + DA A + GK +G +R ++
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDF 163
>AT2G43410.2 | Symbols: FPA | FPA; RNA binding |
chr2:18026397-18030989 REVERSE
Length = 901
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLN 112
C+S++VG I V++ L+E FS G +E + +R+ K++ FI YY+ AL S+N
Sbjct: 94 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTA--FIDYYE-MDDALQAKSMN 150
Query: 113 GRHLFGQ-----------PIKVNWAYASGQREDTSGH-------FNIFVGDLSPEVTDAT 154
G+ + G P K WA + R H + F GD+ P
Sbjct: 151 GKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWI 210
Query: 155 LFACFSVYPSCSDARVMWDQ----------KTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
F + C+D +++ + K+ SR F V FR+ ++A+ L G+
Sbjct: 211 GFPPTAT--QCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRL 268
Query: 205 LGSRQIRCNWAT 216
+ +I+ ++
Sbjct: 269 FNNPRIKIMYSN 280
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLNGR 114
+++VG++ + TE L E+F G ++ ++ + FI+Y A A +L G
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDID--RITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 115 HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
+L G IK+ +A + + +++VG + P V+ L FS + D R + ++
Sbjct: 77 NLNGSQIKIEYARPAKPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRER 130
Query: 175 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 214
KT F+ + DA A + GK +G +R ++
Sbjct: 131 KT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDF 163
>AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL PROTEIN S19); RNA
binding | chr5:19203801-19204951 FORWARD
Length = 212
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+++G LSP + +L FS + ++ARVM ++ TGRSRG+GFV+F ++ A SAI+ +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 201 TGKWLGSRQIRCNWA 215
G+ L I N A
Sbjct: 93 NGQELNGFNISVNVA 107
>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208564-9214412 REVERSE
Length = 533
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 49 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYG----FIHYYDRRSA 104
D S+ ++VG++ TE ++ F G V LI+ +++ F+ Y + A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 105 ALAILSLNGR-HLFGQPIKVNWAYASGQREDTSG-HFNIFVGDLSPEVTDATLFACFSVY 162
AI +L+ + L G V YA G+RE F +FVG L+ + T+ + F +
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 234
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
D +M D+ +SRG GFV + +++ A +AI+ L G +
Sbjct: 235 GHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207164-9214412 REVERSE
Length = 747
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 49 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYG----FIHYYDRRSA 104
D S+ ++VG++ TE ++ F G V LI+ +++ F+ Y + A
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 105 ALAILSLNGR-HLFGQPIKVNWAYASGQREDTSG-HFNIFVGDLSPEVTDATLFACFSVY 162
AI +L+ + L G V YA G+RE F +FVG L+ + T+ + F +
Sbjct: 175 DRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQF 234
Query: 163 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
D +M D+ +SRG GFV + +++ A +AI+ L G +
Sbjct: 235 GHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTY 275
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 292
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IFVG LS +VT+ L + F Y ++ ++M + TGR RGFGF++F +++ A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 201 TGKWLGSRQIRCNWATKGAG 220
G+ LG++ I N A G
Sbjct: 74 HGRELGNKVISVNKAEPKVG 93
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 292
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IFVG LS +VT+ L + F Y ++ ++M + TGR RGFGF++F +++ A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 201 TGKWLGSRQIRCNWATKGAG 220
G+ LG++ I N A G
Sbjct: 74 HGRELGNKVISVNKAEPKVG 93
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G / eIF3g | chr3:3578536-3580366
FORWARD
Length = 321
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
++ V +LS + + L F + + + V DQKTG SRGFGFV+F +++DAQ AIN
Sbjct: 241 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 300
Query: 200 LTGKWLGSRQIRCNWAT 216
L G + +R WAT
Sbjct: 301 LNGYGYDNLILRVEWAT 317
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G / eIF3g | chr3:3578536-3580366
FORWARD
Length = 294
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
++ V +LS + + L F + + + V DQKTG SRGFGFV+F +++DAQ AIN
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 200 LTGKWLGSRQIRCNWAT 216
L G + +R WAT
Sbjct: 274 LNGYGYDNLILRVEWAT 290
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 126
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 198 NDLTGKWLGSRQIRCNWA 215
++ GK L R I N A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RNA
binding / nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 169
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 198 NDLTGKWLGSRQIRCNWA 215
++ GK L R I N A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN RHYTHM,
AND RNA BINDING 2); RNA binding / double-stranded DNA
binding / single-stranded DNA binding |
chr2:9265477-9266316 REVERSE
Length = 159
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
+ FVG L+ D L F+ Y D++++ D++TGRSRGFGFV+F++++ + AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 198 NDLTGKWLGSRQIRCNWA 215
+ G+ L R I N A
Sbjct: 67 EGMNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding /
double-stranded DNA binding / single-stranded DNA
binding | chr2:9265477-9266316 REVERSE
Length = 176
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
+ FVG L+ D L F+ Y D++++ D++TGRSRGFGFV+F++++ + AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 198 NDLTGKWLGSRQIRCNWA 215
+ G+ L R I N A
Sbjct: 67 EGMNGQDLDGRSITVNEA 84
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 1); RNA binding / single-stranded
RNA binding | chr1:21727374-21728539 FORWARD
Length = 360
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 19/185 (10%)
Query: 139 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 198
+ +FVG ++ E ++ L FS Y + +A V ++ TG+ RGFGFV F N D A+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
Query: 199 D---LTGKWLGSRQ-IRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPE 254
D + GK + R+ IR + + V ++ G E + T+ +
Sbjct: 66 DTHFILGKPVDVRKAIRKHELYQ----QPFSMQFLERKVQQMNGGLREMSSNGVTSRTKK 121
Query: 255 NNPQYTTVYVGNLAPEVTQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEA 310
++VG L+ T+ + +F G V+ + R +GFGFV Y +
Sbjct: 122 -------IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
Query: 311 ALAIQ 315
+ +Q
Sbjct: 175 EVVMQ 179
>AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:6067394-6069098 REVERSE
Length = 369
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IFVG L P + + L F VY + ++M+D TGRSRGFGFV+F+ + +D
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 201 TGKWLGSRQIRCNWA 215
LG +Q+ A
Sbjct: 219 KVHELGDKQVEIKRA 233
>AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28686932-28688506 REVERSE
Length = 285
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+FVG L+ E TL F Y +A V+ D+ TGRS+G+GFV+FR+ + A+ A D
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 200 LTGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 85 PT-PIIDGRRANCNLASLG 102
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | EIF3G2; RNA binding /
translation initiation factor | chr5:1808169-1809742
FORWARD
Length = 308
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
++ V +LS + L F + + + V DQKT SRGFGFVSF +++DAQ AIN
Sbjct: 207 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 266
Query: 200 LTGKWLGSRQIRCNWAT 216
L G + +R W+T
Sbjct: 267 LNGYGYDNLILRVEWST 283
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16912511-16913250 REVERSE
Length = 102
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FV LS TD +L FS + +AR++ D +T R +GFGF++F ++ DA+ A+ L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 201 TGKWLGSRQI 210
GK + R I
Sbjct: 69 DGKIVDGRLI 78
>AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492875-2495102
FORWARD
Length = 495
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G +S + + L FS + +A ++ D+ TGR+RGFGFV F + A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
+ R + A +V +N +S +G +P +
Sbjct: 68 --HNIDGRLVEAKKAVP----------RDDQNMVNRSNSSSIQG-------SPGGPGRTR 108
Query: 261 TVYVGNLAPEVTQLDLHRHFHALGAG----VIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
++VG L VT+ D +F G V+ + QR +GFGF+ Y + E A+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS--EEAVEKVL 166
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 167 LKTFHELNGKMVEV 180
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIL-- 109
+++G I E L+E FSS G V +++ + +GF+ + D A + I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 110 -SLNGRHLFGQPI-------KVNWAYASGQREDTSG---HFNIFVGDLSPEVTDATLFAC 158
+++GR + + VN + +S + G IFVG L VT++
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 205
F + + +D VM+D T R RGFGF+++ +++ + + ++L GK +
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 178
>AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492875-2495052
FORWARD
Length = 494
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G +S + + L FS + +A ++ D+ TGR+RGFGFV F + A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
+ R + A +V +N +S +G +P +
Sbjct: 68 --HNIDGRLVEAKKAVP----------RDDQNMVNRSNSSSIQG-------SPGGPGRTR 108
Query: 261 TVYVGNLAPEVTQLDLHRHFHALGAG----VIEEVRVQRDKGFGFVRYSTHAEAALAIQM 316
++VG L VT+ D +F G V+ + QR +GFGF+ Y + E A+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS--EEAVEKVL 166
Query: 317 GNTQSILCGKQIKC 330
T L GK ++
Sbjct: 167 LKTFHELNGKMVEV 180
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIL-- 109
+++G I E L+E FSS G V +++ + +GF+ + D A + I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 110 -SLNGRHLFGQPI-------KVNWAYASGQREDTSG---HFNIFVGDLSPEVTDATLFAC 158
+++GR + + VN + +S + G IFVG L VT++
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 205
F + + +D VM+D T R RGFGF+++ +++ + + ++L GK +
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 178
>AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262879-7264834 REVERSE
Length = 274
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+FVG L+ E TL F Y +A V+ D+ TGRS+G+GFV+FR+ + A+ A D
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 200 LTGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 85 PT-PIIDGRRANCNLASLG 102
>AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 431
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 52 TCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALA 107
+C+ +++G I + +E L++ F S G V +++ + +GF+ + D A
Sbjct: 5 SCK-LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 108 ILSLNGRHLFGQPI-----------KVNWAYASGQREDTSGHFN---IFVGDLSPEVTDA 153
+L +H+ I V + ++ + + G N IFVG L+ VT+A
Sbjct: 64 VLL---KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 154 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA----QSAINDLTGKWL 205
F+ + +D VM+D +T R RGFGF+S+ +++ Q ++L GK +
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 431
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 52 TCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALA 107
+C+ +++G I + +E L++ F S G V +++ + +GF+ + D A
Sbjct: 5 SCK-LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 108 ILSLNGRHLFGQPI-----------KVNWAYASGQREDTSGHFN---IFVGDLSPEVTDA 153
+L +H+ I V + ++ + + G N IFVG L+ VT+A
Sbjct: 64 VLL---KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 154 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA----QSAINDLTGKWL 205
F+ + +D VM+D +T R RGFGF+S+ +++ Q ++L GK +
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE
Length = 946
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQSA 196
N++VG+LSP+V + L F + + ++MW D++ R R GFVSF N+ D Q+A
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAA 239
Query: 197 INDLTGKWLGSRQIRCNW 214
+++ G + +++ W
Sbjct: 240 KDEMQGIIVYEYELKIGW 257
>AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6744029-6746133 FORWARD
Length = 337
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++VG L ++T+ + FS+Y S +++ D+ R + +GFV+F N++ A AI D+
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDM 67
Query: 201 TGKWLGSRQIRCNWATKGAG 220
GK +G R +R N T G
Sbjct: 68 DGKSIGGRAVRVNDVTTRGG 87
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEK---SSYGFIHYYDRRSAALAILSL 111
SVYVG + +TE ++ VFS G V K++ YGF+ + +RRSA AI +
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 112 NGRHLFGQPIKVNWAYASGQR 132
+G+ + G+ ++VN G R
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGR 88
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256621 FORWARD
Length = 358
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 37/183 (20%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IF+G L + T+ F Y +D+ +M D+ TG+ RGFGF++F + I D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 201 TGKWLGSRQIRCNWAT-KGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQY 259
+ +Q+ KGAG + KD T +
Sbjct: 81 --HVINGKQVEIKRTIPKGAG--------------------GNQSKDIKTKK-------- 110
Query: 260 TTVYVGNLAPEVTQLDLHRHFHALGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 315
++VG + VT+ +L F G VI + R +GFGFV + + +
Sbjct: 111 --IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 316 MGN 318
GN
Sbjct: 169 KGN 171
>AT3G56860.2 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2a)
| chr3:21050708-21052144 REVERSE
Length = 478
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKG 218
K +GSR C A+KG
Sbjct: 199 KQPQ-KKIGSRMTACQLASKG 218
>AT3G56860.1 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2a)
| chr3:21050708-21052144 REVERSE
Length = 478
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKG 218
K +GSR C A+KG
Sbjct: 199 KQPQ-KKIGSRMTACQLASKG 218
>AT3G56860.3 | Symbols: UBA2A | UBP1 interacting protein 2a (UBA2a)
| chr3:21050708-21052144 REVERSE
Length = 478
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
H IFV L + TL F Y D + ++D+ +G+S+G+GF+ ++++ A++A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 198 NDLTGKWLGSRQIRCNWATKG 218
K +GSR C A+KG
Sbjct: 199 KQPQ-KKIGSRMTACQLASKG 218
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256014 FORWARD
Length = 231
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IF+G L + T+ F Y +D+ +M D+ TG+ RGFGF++F + I D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 201 TGKWLGSRQIRCNWAT-KGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQY 259
+ +Q+ KGAG + KD T +
Sbjct: 81 --HVINGKQVEIKRTIPKGAG--------------------GNQSKDIKTKK-------- 110
Query: 260 TTVYVGNLAPEVTQLDLHRHFHALGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 315
++VG + VT+ +L F G VI + R +GFGFV + + +
Sbjct: 111 --IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 316 MGNTQSILCGKQIKCSWG 333
GN + + WG
Sbjct: 169 KGNMIDMADTQVSLYKWG 186
>AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 441
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
N+F+ ++ E D L A F + A+V D+ TG S+ FGFVS+ +Q AQ+AI+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 200 LTGKWLGSRQIRC 212
+ G+ LG ++++
Sbjct: 410 MNGRHLGGKKLKV 422
>AT1G13690.1 | Symbols: ATE1 | ATE1; nucleic acid binding /
nucleotide binding | chr1:4693380-4694179 FORWARD
Length = 177
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++VG L+ EV ++ L A F + D + DQ + R FGFV+F ++DA +A++++
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 201 TGKWLGSRQIRCNWA 215
G L R + N+A
Sbjct: 75 DGAELYGRVLTVNYA 89
>AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9392397-9393545 REVERSE
Length = 382
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 123 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 182
++ + S R+ S NIFV L + T L A F VY ++ V+ D+ TGR++GF
Sbjct: 149 ISAVFESADRD--SSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGF 206
Query: 183 GFVSFRNQQDAQSAINDLTGKWLGSRQIRC 212
GFV F+ ++ A++A+ + K + +R + C
Sbjct: 207 GFVLFKTRKGARAALKN-PEKRMYNRTVSC 235
>AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 429
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 128 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 187
+S Q E +G N+F+ ++ E D L A F + A+V D+ TG S+ FGF+S+
Sbjct: 320 SSLQTEGPAGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 378
Query: 188 RNQQDAQSAINDLTGKWLGSRQIRC 212
+Q AQ+AIN + G L ++++
Sbjct: 379 DSQAAAQNAINTMNGCQLSGKKLKV 403
>AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 438
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 128 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 187
+S Q E +G N+F+ ++ E D L A F + A+V D+ TG S+ FGF+S+
Sbjct: 329 SSLQTEGPAGA-NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISY 387
Query: 188 RNQQDAQSAINDLTGKWLGSRQIR 211
+Q AQ+AIN + G L ++++
Sbjct: 388 DSQAAAQNAINTMNGCQLSGKKLK 411
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16225483-16227423 FORWARD
Length = 423
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 44/208 (21%)
Query: 129 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 188
SG D++G IFVG L+ E T A F Y +D+ +M D+KTG+ RGFGFV++
Sbjct: 34 SGGGVDSAG--KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY- 90
Query: 189 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTA 248
A S++ D + I+ N G VE+ +
Sbjct: 91 ----ADSSVVD--------KVIQDNHIIIGK-------------QVEIK-------RTIP 118
Query: 249 TNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRD------KGFGFV 302
N+ + ++VG + V + F G ++E ++ RD +GFGFV
Sbjct: 119 RGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE--LKEHQIMRDHSTGRSRGFGFV 176
Query: 303 RYSTHAEAALAIQMGNTQSILCGKQIKC 330
Y + + GN L G Q++
Sbjct: 177 TYESEDMVDHLLAKGNRIE-LSGTQVEI 203
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 20/171 (11%)
Query: 37 EPIPSGNLPPGFDPSTCRS---------VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIR 87
+P PS ++ D S S ++VG + + T + F G + +++
Sbjct: 16 DPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMK 75
Query: 88 KEKSS----YGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFN--- 140
K+ +GF+ Y D S+ + + + + G+ +++ G +S F
Sbjct: 76 DRKTGQPRGFGFVTYAD--SSVVDKVIQDNHIIIGKQVEIKRTIPRGSM--SSNDFKTKK 131
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
IFVG + V D F + + ++M D TGRSRGFGFV++ ++
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
>AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 293
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++V ++ A L F + + V + +TG SRG G+V+ + A+ AI L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
G +G R++R ++ V++ GT + N P+ Y
Sbjct: 170 DGTEVGGREMRVRYS------------------VDMNPGTRRNPE--VLNSTPKKILMYE 209
Query: 261 T---VYVGNLAPEVTQLD-LHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAAL 312
+ VYVGNL P TQ D L HF G V+ + + R++ F F+ +++ E
Sbjct: 210 SQHKVYVGNL-PWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 313 AIQMGNTQ 320
A+ TQ
Sbjct: 269 ALSFNGTQ 276
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 46 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK----EKSSYGFIHYYDR 101
P P C +YV NI L ++F G V ++ R E G++
Sbjct: 101 PVKKPRPC-ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSI 159
Query: 102 RSAALAILSLNGRHLFGQPIKVNWA--YASGQREDTS-------------GHFNIFVGDL 146
SA +AI SL+G + G+ ++V ++ G R + ++VG+L
Sbjct: 160 NSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNL 219
Query: 147 SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 206
L FS + + RV+ D+KTGR+R F F+SF + ++ +A++ ++ G
Sbjct: 220 PWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEG 279
Query: 207 SRQI 210
R I
Sbjct: 280 RRII 283
>AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107659 FORWARD
Length = 249
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 201 TGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 75 T-PVIDGRRANCNLASLG 91
>AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107618 FORWARD
Length = 242
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 201 TGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 75 T-PVIDGRRANCNLASLG 91
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878497-1879515 FORWARD
Length = 146
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 107 AILSLNGRHLFGQPIKVNWAYAS---GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 163
A+ + GRHL + + + + AS QR + +F+G LS T+ L FS
Sbjct: 3 ALARIGGRHL--KSVCLINSSASCFFTQRRGVAS--KLFIGGLSFCTTEQGLSEAFSKCG 58
Query: 164 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
+A+++ D+ + RS+GFGFV+F + +AQ A+ + G+ L R I ++A
Sbjct: 59 QVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
>AT2G22090.1 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1a)
| chr2:9388571-9390450 REVERSE
Length = 343
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
H IFV L E T TL F Y + V+ D+ TG+++GFGFV F+ ++ A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 198 NDLTGKWLGSRQIRCNWATKG 218
+ + L +R C A+ G
Sbjct: 163 KEPKKRIL-NRTATCQLASMG 182
>AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107949 FORWARD
Length = 347
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+FVG L+ E T+ F + +A V+ D+ +GRS+G+GFV+FR + A+SA D
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 200 LTGKWLGSRQIRCNWATKG 218
T + R+ CN A+ G
Sbjct: 74 AT-PVIDGRRANCNLASLG 91
>AT2G22090.2 | Symbols: UBA1A | UBP1 interacting protein 1a (UBA1a)
| chr2:9389407-9390450 REVERSE
Length = 347
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
H IFV L E T TL F Y + V+ D+ TG+++GFGFV F+ ++ A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 198 NDLTGKWLGSRQIRCNWATKG 218
+ + L +R C A+ G
Sbjct: 163 KEPKKRIL-NRTATCQLASMG 182
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 105
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 40/62 (64%)
Query: 139 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 198
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 199 DL 200
++
Sbjct: 66 EM 67
>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding
protein 6); RNA binding / nucleic acid binding /
nucleotide binding | chr1:6415226-6416283 FORWARD
Length = 155
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 115 HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
++F QP + + A Q + IFVG LSP L F + DA V+ D+
Sbjct: 12 NIFRQPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDR 71
Query: 175 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 210
++G SRGFGFV++ + + A +A+ + K L R I
Sbjct: 72 ESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
>AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucleic
acid binding / nucleotide binding |
chr5:25681849-25683553 REVERSE
Length = 303
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 134 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 193
D S +++ V +++ T L+ F+ Y D + D++TG SRGF FV ++ + +A
Sbjct: 11 DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEA 70
Query: 194 QSAINDLTGKWLGSRQIRCNWATKG 218
A+ L G+ + R+I +A G
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYG 95
>AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucleic
acid binding / nucleotide binding |
chr5:25681849-25683553 REVERSE
Length = 303
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 134 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 193
D S +++ V +++ T L+ F+ Y D + D++TG SRGF FV ++ + +A
Sbjct: 11 DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEA 70
Query: 194 QSAINDLTGKWLGSRQIRCNWATKG 218
A+ L G+ + R+I +A G
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYG 95
>AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19302548-19304106
REVERSE
Length = 371
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA----QSA 196
IFVG L+ VT+A F+ + +D VM+D +T R RGFGF+S+ +++ Q
Sbjct: 48 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 107
Query: 197 INDLTGKWL 205
++L GK +
Sbjct: 108 FHELNGKMV 116
>AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445265-13447592 FORWARD
Length = 452
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 51 STCRSVYVGNIHTQVTEPLLQEVFSSTG-LVEGCKLIRKEKSS-----YGFIHYYDRRSA 104
S +++G I E LQE F G LVE +I +++++ +GFI + D A
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVE--AVIMRDRTTGRARGFGFIVFADPSVA 66
Query: 105 ALAILSLNGRHLF-GQPIKVNWAYASGQREDTSGHFN--------------------IFV 143
I+ +H+ G+ ++ A ++ H + IFV
Sbjct: 67 ERVIMD---KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFV 123
Query: 144 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI----ND 199
G L +T+A F + + +D VM+D T R RGFGF++F +++ + ++
Sbjct: 124 GGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHE 183
Query: 200 LTGKWL 205
L GK +
Sbjct: 184 LNGKMV 189
>AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445552-13447592 FORWARD
Length = 455
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 51 STCRSVYVGNIHTQVTEPLLQEVFSSTG-LVEGCKLIRKEKSS-----YGFIHYYDRRSA 104
S +++G I E LQE F G LVE +I +++++ +GFI + D A
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVE--AVIMRDRTTGRARGFGFIVFADPSVA 69
Query: 105 ALAILSLNGRHLF-GQPIKVNWAYASGQREDTSGHFN--------------------IFV 143
I+ +H+ G+ ++ A ++ H + IFV
Sbjct: 70 ERVIMD---KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFV 126
Query: 144 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI----ND 199
G L +T+A F + + +D VM+D T R RGFGF++F +++ + ++
Sbjct: 127 GGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHE 186
Query: 200 LTGKWL 205
L GK +
Sbjct: 187 LNGKMV 192
>AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9173712-9179065 REVERSE
Length = 1003
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 61 IHTQVTE---------PLLQEVFSSTGLV-EGCKLIRKEKSSYGFIHYYDRRSAALAILS 110
+H++V E PL +E GL +GC R E S+ F +SA A+
Sbjct: 252 VHSRVKEIGTVCSVRYPLPKEELQQNGLTQDGC---RAEASAVLFTSV---KSACAAVAK 305
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
L+ + G I WA G + + + + +L + + + FS D +
Sbjct: 306 LHQTEVKGNLI---WARQLGGEGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFI 362
Query: 171 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
+ +TG +GF FV F ++DA +AI G G R I +WA
Sbjct: 363 PKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
>AT5G07290.1 | Symbols: AML4 | AML4 (ARABIDOPSIS MEI2-LIKE 4); RNA
binding / nucleic acid binding / nucleotide binding |
chr5:2294248-2298491 FORWARD
Length = 907
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLN 112
R ++V N+ + + + L +F G V K + + + YYD R+A A +L+
Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRG-FIMVSYYDIRAAQKAARALH 268
Query: 113 GRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 172
GR L G+ + + ++ ++ S ++V +L +++ L FS Y + R
Sbjct: 269 GRLLRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR--- 325
Query: 173 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 212
+T ++ F + + A+ A+ L G + RQ++
Sbjct: 326 --RTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr2:19229516-19231043 FORWARD
Length = 336
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IFVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+F+ + A A ++
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 201 TGKWLGSRQIRCNWATKGA 219
+ R+ CN A GA
Sbjct: 84 N-PVIDGRRANCNLACLGA 101
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15743112-15744504 REVERSE
Length = 142
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FV LS T+ L F+ + DARV+ D+ +GRS+GFGFV++ +DA+ A ++
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 201 TGKWL 205
K+L
Sbjct: 96 NAKFL 100
>AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr2:14898341-14899590 FORWARD
Length = 308
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS---YGFIHYYDRRSAALAILS 110
R ++V N+ ++ + E+F G V ++IR++ + F+ A AI
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGH-----------FNIFVGDLSPEVTDATLFACF 159
+ + G+ I V++A + S + ++V +L+ + L F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 160 SVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
+ + ARV++ GRS G+GFVSF +++A++AI L GK + R I ++ +
Sbjct: 215 TAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRS 274
Query: 219 AG 220
A
Sbjct: 275 AS 276
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22171332-22172656 FORWARD
Length = 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
N+FV LS T L F+ + +DA+V+ D+ +G S+GFGFV + +D+ I
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 200 LTGKWL 205
+ GK+L
Sbjct: 117 MDGKFL 122
>AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 294
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 170 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXX 229
V + +TG SRG G+V+ + A+ AI L G +G R++R ++
Sbjct: 140 VSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYS-------------- 185
Query: 230 XXXVVELTNGTSEEGKDTATNEAPENNPQYTT---VYVGNLAPEVTQLD-LHRHFHALG- 284
V++ GT + N P+ Y + VYVGNL P TQ D L HF G
Sbjct: 186 ----VDMNPGTRRNPE--VLNSTPKKILMYESQHKVYVGNL-PWFTQPDGLRNHFSKFGT 238
Query: 285 ---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQ 320
V+ + + R++ F F+ +++ E A+ TQ
Sbjct: 239 IVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQ 277
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 46 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK-----EKSSYGFIHYYD 100
P P C +YV NI L ++F G V +++ + E G++
Sbjct: 101 PVKKPRPC-ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGS 159
Query: 101 RRSAALAILSLNGRHLFGQPIKVNWA--YASGQREDTS-------------GHFNIFVGD 145
SA +AI SL+G + G+ ++V ++ G R + ++VG+
Sbjct: 160 INSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGN 219
Query: 146 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 205
L L FS + + RV+ D+KTGR+R F F+SF + ++ +A++ ++
Sbjct: 220 LPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYE 279
Query: 206 GSRQI 210
G R I
Sbjct: 280 GRRII 284
>AT1G22330.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr1:7886693-7889241 FORWARD
Length = 291
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 124 NWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 183
N +Y DT+ H +FVG L+ E + F + +A ++ D+ TG+S+G+G
Sbjct: 3 NTSYYRSPFGDTT-HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61
Query: 184 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
FV+FR+ A A+ D + R+ CN A+ G
Sbjct: 62 FVTFRDSDSATRAVAD-PNPVIDGRKANCNIASFG 95
>AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr1:2260562-2262795 REVERSE
Length = 481
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 246 DTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYS 305
+ T E+P++ T+YVG L + + D+ F+A G IE +R+ DK FV Y+
Sbjct: 215 EMGTLESPDDE-SIKTLYVGGLNSRILEQDIRDQFYAHGE--IESIRILADKACAFVTYT 271
Query: 306 THAEAALAIQMGNTQSILCGKQIKCSWG 333
+ A A Q + + ++ G+++K +WG
Sbjct: 272 SREGAEKAAQELSNRLVINGQRLKLTWG 299
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE
Length = 352
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKE----KSSYGFIHYYDRRSAALAILSL 111
VYVG I +TE L VFS G + LIR + + F+ Y D+RS LA+ +L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 112 NGRHLFGQPIKVNW--AYASGQRED 134
NG + G+ IKV+ AY + ED
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEED 122
>AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357503-6359081 REVERSE
Length = 172
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 142 FVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 201
FV S V++ L FS + ++ +++ +++T +S G+G+V F +++DAQSA+ +
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 202 GKWLGSRQIRCNWATKG 218
GK+ R I + G
Sbjct: 140 GKFFDGRFILVKFGQPG 156
>AT2G29580.1 | Symbols: | zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr2:12652011-12654158 FORWARD
Length = 483
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 246 DTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYS 305
+ T E+PE+ T+YVG L V + D+ F+A G IE +R+ +K FV Y+
Sbjct: 215 EMGTLESPEDQ-SIRTLYVGGLNSRVLEQDIRDQFYAHGE--IESIRILAEKACAFVTYT 271
Query: 306 THAEAALAIQMGNTQSILCGKQIKCSWG 333
T A A + + + ++ G+++K +WG
Sbjct: 272 TREGAEKAAEELSNRLVVNGQRLKLTWG 299