Jatropha Genome Database

JcCA0029581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.20 - phase: 0 /pseudo/partial
         (212 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02410.1 | Symbols:  | unknown protein | chr2:632713-634613 F...   273   4e-74

>AT2G02410.1 | Symbols:  | unknown protein | chr2:632713-634613
           FORWARD
          Length = 308

 Score =  273 bits (699), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 139/181 (76%), Positives = 160/181 (88%), Gaps = 2/181 (1%)

Query: 34  IVIVMGKSKKP-RSSFPKGSDPAPPRITSNIKQNLQFLKLWKEFQKRKSSTPKPATSYRR 92
           +V + GKSKKP +SS  K S+P PPRI SN+K NLQ LKLWKEFQ R S   KPATSYR+
Sbjct: 37  VVKMGGKSKKPHQSSSFKESEPEPPRIKSNVKHNLQLLKLWKEFQSRGSGMAKPATSYRK 96

Query: 93  KKVEKEELPEDTELYRDPTLSLYYTNQ-ILDNAVPVLLVDGYNVCGYWAKLKKHFMNGRL 151
           KKVEK+ELP+D+ELYRDPT +LYYTNQ +LD+AVPVLLVDGYNVCGYW KLKKHFM GRL
Sbjct: 97  KKVEKDELPDDSELYRDPTNTLYYTNQGLLDDAVPVLLVDGYNVCGYWMKLKKHFMKGRL 156

Query: 152 DIARQKLIDELVTFSMLRDVKVVVVFDAMMSGLPTHKETFAGVDVVFSGESCADAWIXKE 211
           D+ARQKL+DELV+FSM+++VKVVVVFDA+MSGLPTHKE FAGVDV+FSGE+CADAWI KE
Sbjct: 157 DVARQKLVDELVSFSMVKEVKVVVVFDALMSGLPTHKEDFAGVDVIFSGETCADAWIEKE 216

Query: 212 V 212
           V
Sbjct: 217 V 217