Jatropha Genome Database

JcCA0029471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029471.10 + phase: 1 /partial
         (110 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14550.1 | Symbols:  | unknown protein | chr5:4691321-4693732...   136   3e-33
AT1G62305.2 | Symbols:  | unknown protein | chr1:23026989-230291...    89   6e-19
AT1G62305.1 | Symbols:  | unknown protein | chr1:23026989-230291...    89   7e-19
AT1G11940.1 | Symbols:  | unknown protein | chr1:4031768-4033946...    88   1e-18
AT5G14550.2 | Symbols:  | unknown protein | chr5:4691633-4693732...    61   1e-10

>AT5G14550.1 | Symbols:  | unknown protein | chr5:4691321-4693732
           REVERSE
          Length = 377

 Score =  136 bits (342), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 72/91 (79%)

Query: 12  QEGLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETE 71
           Q+G++ E+TRR            K  ERRGWHP+TYKFSDATP LI++IK IDNI YETE
Sbjct: 273 QKGVDSELTRRSLTHSAWDLSSSKSNERRGWHPMTYKFSDATPDLIQSIKGIDNINYETE 332

Query: 72  YRKEWCSSKGKPSTCFLFARKFTRPAALRLL 102
           YR+EWCSSKGKPS CFLFARKFTRPAALRLL
Sbjct: 333 YRREWCSSKGKPSPCFLFARKFTRPAALRLL 363


>AT1G62305.2 | Symbols:  | unknown protein | chr1:23026989-23029189
           REVERSE
          Length = 354

 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 14  GLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETEYR 73
           GLE E+ RR            K  E + WHP+T+   +  P  I+ IK I+++YYE+EYR
Sbjct: 253 GLENEMERRTVTYTTWNLSAKK-AEAKSWHPLTFTSDNCGPEEIEGIKKINHVYYESEYR 311

Query: 74  KEWCSSKGKPSTCFLFARKFTRPAALRLLN 103
            EWC +  KP  CFLFARKFTR AA+RLL+
Sbjct: 312 TEWCRANSKPVPCFLFARKFTRGAAMRLLS 341


>AT1G62305.1 | Symbols:  | unknown protein | chr1:23026989-23029189
           REVERSE
          Length = 378

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 14  GLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETEYR 73
           GLE E+ RR            K  E + WHP+T+   +  P  I+ IK I+++YYE+EYR
Sbjct: 277 GLENEMERRTVTYTTWNLSAKK-AEAKSWHPLTFTSDNCGPEEIEGIKKINHVYYESEYR 335

Query: 74  KEWCSSKGKPSTCFLFARKFTRPAALRLLN 103
            EWC +  KP  CFLFARKFTR AA+RLL+
Sbjct: 336 TEWCRANSKPVPCFLFARKFTRGAAMRLLS 365


>AT1G11940.1 | Symbols:  | unknown protein | chr1:4031768-4033946
           REVERSE
          Length = 383

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 12  QEGLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETE 71
            +GLE E+ RR            K  E + WHPVT+   ++ P  IK IK ID++YYE+E
Sbjct: 281 MQGLESEMERRTVTYTVWNVSGTKY-EAKSWHPVTFTLENSGPEEIKEIKKIDHVYYESE 339

Query: 72  YRKEWCSSKGKPSTCFLFARKFTRPAALRLLN 103
            R EWC +  KP  CFLFARKFT  AA+R+++
Sbjct: 340 SRTEWCKADSKPVPCFLFARKFTNEAAMRIVS 371


>AT5G14550.2 | Symbols:  | unknown protein | chr5:4691633-4693732
           REVERSE
          Length = 346

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query: 12  QEGLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIK 61
           Q+G++ E+TRR            K  ERRGWHP+TYKFSDATP LI++IK
Sbjct: 260 QKGVDSELTRRSLTHSAWDLSSSKSNERRGWHPMTYKFSDATPDLIQSIK 309