Jatropha Genome Database

JcCA0029051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029051.30 + phase: 0 /partial
         (354 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF ...   207   6e-54
AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITIO...   192   2e-49
AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP...    51   9e-07
AT5G24330.1 | Symbols: ATXR6, SDG34 | ATXR6; DNA binding / prote...    49   6e-06

>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF
           REPLICATION COMPLEX 1B); DNA binding / double-stranded
           methylated DNA binding / protein binding |
           chr4:7459812-7462253 REVERSE
          Length = 813

 Score =  207 bits (528), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 170/303 (56%), Gaps = 40/303 (13%)

Query: 59  MADSPRI-TLRSPSKKP-----KQTPPLSSICLTPRTPQVVDPPXXXXXXXXXXXDQITT 112
           MA +PR  T +SP+K P     K     SS   TP+TP+   P            D    
Sbjct: 1   MASTPRAKTFKSPTKTPSNIYRKSYLSPSSTSHTPQTPETHTPLRRSARHVSRKIDLGND 60

Query: 113 PQKCASQLKKPIEDSLKIRRNSRKNGSIKTPESKRDTESTXXXXXXXXXXNIEVSFSPVS 172
           P         PIE    IR+  R   + + P +      +           I+ SF+PVS
Sbjct: 61  PIDAPGN--DPIEGMNLIRKRER---APRKPTTDVVPSKSKKTETPKKKKKID-SFTPVS 114

Query: 173 PDQLDTXXXXXXXXXXXXMMTRAMASKNAKSEQKGNRKRVYYKKVVYDGGEFEVGDDVYV 232
           P + +T                         ++   +KRVYY KV +D  EFE+GDDVYV
Sbjct: 115 PIRSETI------------------------KKTKKKKRVYYNKVEFDETEFEIGDDVYV 150

Query: 233 KRREDASSDDEDPEVEE-CRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICG 291
           KRRED++SD+E+    E C++CFK+   +M+ECDDCLGGFHLKCLKPPLKEVPEGDWIC 
Sbjct: 151 KRREDSNSDEEEDPEIEDCQICFKSDTNIMIECDDCLGGFHLKCLKPPLKEVPEGDWICQ 210

Query: 292 FCEARKLGKE--VELPKSPEGKKRSRTLREKLLSSDLWAVRIESLWKEV-DGSYWFKGRW 348
           FCE +K G+   ++LPK PEGKK +RT+REKLLS DLWA RI+ LWKEV DG YW + RW
Sbjct: 211 FCEVKKSGQSQTLDLPKPPEGKKLARTMREKLLSGDLWAARIDKLWKEVDDGVYWIRARW 270

Query: 349 YII 351
           Y+I
Sbjct: 271 YMI 273


>AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITION
           COMPLEX 1); DNA binding / double-stranded methylated DNA
           binding | chr4:8422236-8424665 FORWARD
          Length = 809

 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/298 (41%), Positives = 167/298 (56%), Gaps = 50/298 (16%)

Query: 66  TLRSPSKKPKQT------PPLSSICLTPRTPQVVDPPXXXXXXXXXXXDQITTPQKCASQ 119
           T +SP+K P +        P S+    P+TP+ + P            +    P      
Sbjct: 11  TFKSPTKTPTKMYRKSYLSPSSTSLTPPQTPETLTPLRRSSRHVSRKINLGNDPIDLPG- 69

Query: 120 LKKPIEDSLKIRRNSRKNGSIKTPESKRDTESTXXXXXXXXXXNIEVSFSPVSPDQLDTX 179
            K+ +E+   IR+  ++   I   E  +  +            + EVSFSPVSP +    
Sbjct: 70  -KESVEEINLIRKPRKRTNDIVVAEKSKKKK-----------IDPEVSFSPVSPIR---- 113

Query: 180 XXXXXXXXXXXMMTRAMASKNAKSEQKGNRKRVYYKKVVYDGGEFEVGDDVYVKR---RE 236
                                +++++   +KRVYY KV +D  EFE+GDDVYVKR     
Sbjct: 114 ---------------------SETKKTKKKKRVYYNKVEFDETEFEIGDDVYVKRTEDAN 152

Query: 237 DASSDDEDPEVEECRVCFKA-GKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEA 295
               ++EDPE+E+C++CFK+    +M+ECDDCLGGFHL CLKPPLKEVPEGDWIC FCE 
Sbjct: 153 PDEEEEEDPEIEDCQICFKSHTNTIMIECDDCLGGFHLNCLKPPLKEVPEGDWICQFCEV 212

Query: 296 RKLGKE-VELPKSPEGKKRSRTLREKLLSSDLWAVRIESLWKEV-DGSYWFKGRWYII 351
           +K G+  V +PK PEGKK +RT++EKLLSSDLWA RIE LWKEV DG YW + RWY+I
Sbjct: 213 KKSGQTLVVVPKPPEGKKLARTMKEKLLSSDLWAARIEKLWKEVDDGVYWIRARWYMI 270


>AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
           binding / DNA binding / chromatin binding / helicase/
           nucleic acid binding / protein binding / zinc ion
           binding | chr5:18083659-18092162 REVERSE
          Length = 2242

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 249 ECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFC 293
           EC +C   G   +L CD C   +H  CL PPLK +P G WIC  C
Sbjct: 77  ECVICDLGGD--LLCCDSCPRTYHTACLNPPLKRIPNGKWICPKC 119


>AT5G24330.1 | Symbols: ATXR6, SDG34 | ATXR6; DNA binding / protein
           binding | chr5:8295245-8296997 REVERSE
          Length = 349

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 248 EECRVCFKAGK--AVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEARKLGKEVEL 304
           EEC     +GK  A +L CD C  GFHL CL+P L  VP+G W C  C   ++ K   L
Sbjct: 36  EEC----SSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSKHQIPKSFPL 90