Jatropha Genome Database

JcCA0029051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029051.10 + phase: 1 /partial
         (55 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12080.1 | Symbols: emb2738 | emb2738 (embryo defective 2738)...    67   3e-12

>AT3G12080.1 | Symbols: emb2738 | emb2738 (embryo defective 2738);
           GTP binding | chr3:3847851-3851980 FORWARD
          Length = 663

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 35/39 (89%)

Query: 1   FPETYRRYMEKQLRSDIGFSGTPIRLLWRSRRKMEKSEG 39
           F +TYRRYMEKQLR+D GF+GTPIRLLWRSR++ +K+ G
Sbjct: 604 FSDTYRRYMEKQLRTDAGFAGTPIRLLWRSRKRSDKNGG 642