Jatropha Genome Database
- JcCA0028741.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0028741.30 + phase: 0
(357 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24380.1 | Symbols: | unknown protein | chr4:12612554-126135... 209 3e-54
AT5G65400.1 | Symbols: | unknown protein | chr5:26131448-261330... 181 6e-46
AT4G24380.2 | Symbols: | unknown protein | chr4:12612554-126133... 161 5e-40
AT1G09280.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 59 4e-09
>AT4G24380.1 | Symbols: | unknown protein | chr4:12612554-12613586
FORWARD
Length = 234
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 145/219 (66%), Gaps = 4/219 (1%)
Query: 2 KILCLHGFRTSGSFLQKQISKWDPSILAHFDLDFPNGIFPAGGKSDIDGIFPPPYFEWFQ 61
+ LCLHGFRTSG ++ Q+ KW S++ DL F + FP GKSD++GIF PPY+EWFQ
Sbjct: 13 RFLCLHGFRTSGEIMKIQLHKWPKSVIDRLDLVFLDAPFPCQGKSDVEGIFDPPYYEWFQ 72
Query: 62 YNQDFTEYTNLDKCISYLCEYITTKGPFDGLLGFSQGATLSALLLGYQLQGKVLKEHPPM 121
+N++FTEYTN +KC+ YL + + GPFDGL+GFSQGA LS L G Q +G ++ P +
Sbjct: 73 FNKEFTEYTNFEKCLEYLEDRMIKLGPFDGLIGFSQGAILSGGLPGLQAKGIAFQKVPKI 132
Query: 122 KLFISISGTKFRDPSICDIAYKDIMKIKSVHFIGAKDWLRLPSEELATAFDSPLIIRHPQ 181
K I I G K + + + AY ++ S+HF+G D+L+ +L ++ +P+++ HP+
Sbjct: 133 KFVIIIGGAKLKSAKLAENAYSSSLETLSLHFLGETDFLKPYGTQLIESYKNPVVVHHPK 192
Query: 182 GHTVPRLDEAAIEQLRGWVAEILQCHNKDLIEKLKNGEE 220
GHTVPRLDE ++E++ ++ + ++E+ KNGEE
Sbjct: 193 GHTVPRLDEKSLEKVTAFIDTLEHL----VMEEDKNGEE 227
>AT5G65400.1 | Symbols: | unknown protein | chr5:26131448-26133062
FORWARD
Length = 252
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 131/209 (62%), Gaps = 5/209 (2%)
Query: 2 KILCLHGFRTSGSFLQKQISKWDPSILAHFDLDFPNGIFPAGGKSDIDGIFPPPYFEWFQ 61
+ILCLHGFRTSG LQ I KW +IL DLDF + FPA GKSD++ F PPY+EW+Q
Sbjct: 31 RILCLHGFRTSGRILQAGIGKWPDTILRDLDLDFLDAPFPATGKSDVERFFDPPYYEWYQ 90
Query: 62 YNQDFTEYTNLDKCISYLCEYITTKGPFDGLLGFSQGATLSALLLGYQLQGKVLKEHPPM 121
N+ F EY N ++C++Y+ +Y+ GPFDGLLGFSQGA L+A + G Q QG L + P +
Sbjct: 91 ANKGFKEYRNFEECLAYIEDYMIKNGPFDGLLGFSQGAFLTAAIPGMQEQGSALTKVPKV 150
Query: 122 KLFISISGTK-----FRDPSICDIAYKDIMKIKSVHFIGAKDWLRLPSEELATAFDSPLI 176
K + ISG K F +P A+ ++ S+HFIG +D+L++ E L +F P++
Sbjct: 151 KFLVIISGAKIPGLMFGEPKAAVNAFSSPVRCPSLHFIGERDFLKIEGEVLVESFVEPVV 210
Query: 177 IRHPQGHTVPRLDEAAIEQLRGWVAEILQ 205
I H GH +P+LD A E + + I Q
Sbjct: 211 IHHSGGHIIPKLDTKAEETMLSFFQSIRQ 239
>AT4G24380.2 | Symbols: | unknown protein | chr4:12612554-12613310
FORWARD
Length = 171
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 103/155 (66%)
Query: 2 KILCLHGFRTSGSFLQKQISKWDPSILAHFDLDFPNGIFPAGGKSDIDGIFPPPYFEWFQ 61
+ LCLHGFRTSG ++ Q+ KW S++ DL F + FP GKSD++GIF PPY+EWFQ
Sbjct: 13 RFLCLHGFRTSGEIMKIQLHKWPKSVIDRLDLVFLDAPFPCQGKSDVEGIFDPPYYEWFQ 72
Query: 62 YNQDFTEYTNLDKCISYLCEYITTKGPFDGLLGFSQGATLSALLLGYQLQGKVLKEHPPM 121
+N++FTEYTN +KC+ YL + + GPFDGL+GFSQGA LS L G Q +G ++ P +
Sbjct: 73 FNKEFTEYTNFEKCLEYLEDRMIKLGPFDGLIGFSQGAILSGGLPGLQAKGIAFQKVPKI 132
Query: 122 KLFISISGTKFRDPSICDIAYKDIMKIKSVHFIGA 156
K I I G K + + + AY ++ S+HF+G
Sbjct: 133 KFVIIIGGAKLKSAKLAENAYSSSLETLSLHFLGT 167
>AT1G09280.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763),
Protein of unknown function DUF341 (InterPro:IPR005645);
BEST Arabidopsis thaliana protein match is:
rhodanese-like domain-containing protein
(TAIR:AT2G40760.1); Has 4342 Blast hits to 4339 proteins
in 940 species: Archae - 0; Bacteria - 1695; Metazoa -
138; Fungi - 282; Plants - 108; Viruses - 0; Other
Eukaryotes - 2119 (source: NCBI BLink). |
chr1:2998209-3001253 REVERSE
Length = 581
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 42/237 (17%)
Query: 1 MKILCLHGFRTSGSFLQKQISKWDPS---------ILAHFDLDF-------PNGI----F 40
++ILCLHGFR + S + + I A +L F P+G+ F
Sbjct: 354 LRILCLHGFRQNASSFKGRTGSLAKKLKNIAELVFIDAPHELQFIYQTATPPSGVCNKKF 413
Query: 41 PAGGKSDIDGIFPPPYFEWFQYNQDF------TEYTNLDKCISYLCEYITTKGPFDGLLG 94
SD D P W F T+ DK ++YL KGPFDG+LG
Sbjct: 414 AWLVSSDFD---KPSETGWTVAQCQFDPLQYQTQTEGFDKSLTYLKTAFEEKGPFDGILG 470
Query: 95 FSQGATLSALLLGYQLQGKVLKEHPPMKLFISISGTKFRDPSICDIAYKDIMKIKSVHFI 154
FSQGA ++A + G Q Q L + + SG F + ++ K +K S+H
Sbjct: 471 FSQGAAMAAAVCGKQEQ---LVGEIDFRFCVLCSG--FTPWPLLEMKEKRSIKCPSLHIF 525
Query: 155 GA-----KDWLRLPSEELATAFD--SPLIIRHPQGHTVPRLDEAAIEQLRGWVAEIL 204
G+ + + S +LA F+ I+ H GH +P I++++ ++ + +
Sbjct: 526 GSQPGKDRQIVTQASSDLAGLFEDGCATIVEHDFGHIIPT-KSPYIDEIKAFLYQFI 581