Jatropha Genome Database

JcCA0028741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.10 - phase: 0 
         (193 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48850.1 | Symbols: EMB1144 | EMB1144 (embryo defective 1144)...   317   3e-87
AT1G48850.2 | Symbols: EMB1144 | EMB1144 (embryo defective 1144)...   201   2e-52
AT1G48850.3 | Symbols: EMB1144 | EMB1144 (embryo defective 1144)...   201   2e-52

>AT1G48850.1 | Symbols: EMB1144 | EMB1144 (embryo defective 1144);
           chorismate synthase | chr1:18065154-18067956 REVERSE
          Length = 436

 Score =  317 bits (812), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 165/182 (90%)

Query: 1   MIAAVDAIRVKGDSIGGVVTCIVRNAPCGLGSPVFDKLEAEFAKALLSLPASKGFEVGSG 60
           MIAA+DA+R KG+S+GGVVTCIVRNAP GLG+PVFDKLEAE AKA +SLPA+KGFE GSG
Sbjct: 245 MIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSG 304

Query: 61  FAGTFLTGSEHNDEFYLDEHGKIRTRRNRSGGIQEGISNGEIIKMRVAFKPTATISKKQN 120
           FAGTFLTG EHNDEFY DE+G+IRTR NRSGGIQ GISNGEII MRVAFKPT+TI +KQN
Sbjct: 305 FAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQN 364

Query: 121 TVTRDRMEIELIACGRHDPCVVPRAVPMVEAMVALVLVDQLMAHHAQCGLFPINPMLQEP 180
           TVTRD++E E+IA GRHDPCVVPRAVPMVEAMVALVLVDQLMA +AQC LFPINP LQEP
Sbjct: 365 TVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPINPELQEP 424

Query: 181 LN 182
           L 
Sbjct: 425 LQ 426


>AT1G48850.2 | Symbols: EMB1144 | EMB1144 (embryo defective 1144);
           chorismate synthase | chr1:18065399-18067956 REVERSE
          Length = 380

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 107/119 (89%)

Query: 1   MIAAVDAIRVKGDSIGGVVTCIVRNAPCGLGSPVFDKLEAEFAKALLSLPASKGFEVGSG 60
           MIAA+DA+R KG+S+GGVVTCIVRNAP GLG+PVFDKLEAE AKA +SLPA+KGFE GSG
Sbjct: 245 MIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSG 304

Query: 61  FAGTFLTGSEHNDEFYLDEHGKIRTRRNRSGGIQEGISNGEIIKMRVAFKPTATISKKQ 119
           FAGTFLTG EHNDEFY DE+G+IRTR NRSGGIQ GISNGEII MRVAFKPT+TI + +
Sbjct: 305 FAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGEAK 363


>AT1G48850.3 | Symbols: EMB1144 | EMB1144 (embryo defective 1144);
           chorismate synthase | chr1:18065399-18067956 REVERSE
          Length = 380

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 105/115 (91%)

Query: 1   MIAAVDAIRVKGDSIGGVVTCIVRNAPCGLGSPVFDKLEAEFAKALLSLPASKGFEVGSG 60
           MIAA+DA+R KG+S+GGVVTCIVRNAP GLG+PVFDKLEAE AKA +SLPA+KGFE GSG
Sbjct: 245 MIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSG 304

Query: 61  FAGTFLTGSEHNDEFYLDEHGKIRTRRNRSGGIQEGISNGEIIKMRVAFKPTATI 115
           FAGTFLTG EHNDEFY DE+G+IRTR NRSGGIQ GISNGEII MRVAFKPT+TI
Sbjct: 305 FAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTI 359