Jatropha Genome Database
- JcCA0028681.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0028681.20 + phase: 0 /TE/partial
(1035 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Symbols: | reverse transcriptase, putative / RNA-... 199 7e-51
AT3G09510.1 | Symbols: | nucleic acid binding | chr3:2921804-29... 125 2e-28
ATMG00310.1 | Symbols: ORF154 | hypothetical protein | chrM:9088... 112 1e-24
ATMG01250.1 | Symbols: ORF102 | hypothetical protein | chrM:3105... 88 2e-17
AT1G43760.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 88 3e-17
AT4G20520.1 | Symbols: | RNA binding / RNA-directed DNA polymer... 74 6e-13
AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 70 7e-12
AT2G02650.1 | Symbols: | reverse transcriptase-related | chr2:7... 59 1e-08
AT3G25270.1 | Symbols: | nucleic acid binding | chr3:9203934-92... 57 6e-08
AT1G10000.1 | Symbols: | nucleic acid binding / ribonuclease H ... 54 5e-07
AT3G26855.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 51 4e-06
>AT4G29090.1 | Symbols: | reverse transcriptase, putative /
RNA-dependent DNA polymerase, putative |
chr4:14333528-14335255 FORWARD
Length = 575
Score = 199 bits (507), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 172/321 (53%), Gaps = 19/321 (5%)
Query: 577 AIPTYCMSVFKIPLSICVTMQKRMNKFWWGKKEGGRRGIHWLAWERMCCSKREGGRGFRD 636
A+PTY M+ F +P ++C + + FWW K+ + G+HW AW+ + C K EGG GF+D
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAK-GMHWKAWDHLSCYKAEGGIGFKD 60
Query: 637 LHCFNMAMLAKQGWRLMMEPDTLFSKLFKAKYFHNRDFLDAPLSRRPTYVWRSIHAAMGV 696
+ FN+A+L KQ WR++ P++L +K+FK++YFH D L+APL RP++VW+SIHA+ +
Sbjct: 61 IEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 697 LKQGVRWRVGNGETIGVLSHPWM---PLDHSFWVE----DSRDFVDPTMKVRELFVEGEG 749
L+QG R VGNGE I + H W+ P + ++ V +KV +L E
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 750 RWDVGKVMTLFSMREFRAILGIPISINASRDQIMWHWDKKGIYSVRSGYYVARRLL--RG 807
W + LF E + I + D W + G Y+V+SGY+V +++ R
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 808 RVHEVD----GGWWGKMWCLDASPKDKDFMWRALRNVLPTKERLRRRGVEVD---IGCPW 860
EV + K+W SPK + F+W+ L N LP L R + + I CP
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 861 CGEEEDINHAIVLCSKAKGVW 881
C +E +NH + C+ A+ W
Sbjct: 301 C--KETVNHLLFKCTFARLTW 319
>AT3G09510.1 | Symbols: | nucleic acid binding |
chr3:2921804-2923258 FORWARD
Length = 484
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 151/333 (45%), Gaps = 34/333 (10%)
Query: 664 FKAKYFHNRDFLDAPLSRRPTYVWRSIHAAMGVLKQGVRWRVGNGETIG------VLSHP 717
KA+YF + LDA + ++ +Y W S+ + +LK+G R +G+G+ I V SHP
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 718 WMPLDHSFWVEDSRDFVDPTMKVRELFVEGEGR---WDVGKVMTLFSMREFRAILGIPIS 774
PL+ E++ M + LF E +G WD K+ + I I ++
Sbjct: 61 PRPLN----TEETYK----EMTINNLF-ERKGSYYFWDDSKISQFVDQSDHGFIHRIYLA 111
Query: 775 INASRDQIMWHWDKKGIYSVRSGYYVARRLLRGRVHEVDGGWWG-----KMWCLDASPKD 829
+ D+I+W+++ G Y+VRSGY++ + ++ ++W L PK
Sbjct: 112 KSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKL 171
Query: 830 KDFMWRALRNVLPTKERLRRRGVEVDIGCPWCG-EEEDINHAIVLCSKAKGVWRQGGYEV 888
K F+WRAL L T ERL RG+ +D CP C E E INHA+ C A WR +
Sbjct: 172 KHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSL 231
Query: 889 ---------GDINISFTNFFLQVLAHGDKIKSQHFLVYARYIWMARNNALWNNIRDTCYT 939
+ NIS F+Q D K + R IW ARNN ++N R++
Sbjct: 232 IRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWR-IWKARNNVVFNKFRESPSK 290
Query: 940 TFLKAKEYMISWEHTKLAQRSMASESSNTSRQR 972
T L AK W + + + S + + +
Sbjct: 291 TVLSAKAETHDWLNATQSHKKTPSPTRQIAENK 323
>ATMG00310.1 | Symbols: ORF154 | hypothetical protein |
chrM:90883-91347 REVERSE
Length = 154
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 577 AIPTYCMSVFKIPLSICVTMQKRMNKFWWGKKEGGRRGIHWLAWERMCCSKRE-GGRGFR 635
A+P Y MS F++ +C + M +FWW E R+ I W+AW+++C SK + GG GFR
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRK-ISWVAWQKLCKSKEDDGGLGFR 60
Query: 636 DLHCFNMAMLAKQGWRLMMEPDTLFSKLFKAKYFHNRDFLDAPLSRRPTYVWRSIHAAMG 695
DL FN A+LAKQ +R++ +P TL S+L +++YF + ++ + RP+Y WRSI
Sbjct: 61 DLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRE 120
Query: 696 VLKQGVRWRVGNG 708
+L +G+ +G+G
Sbjct: 121 LLSRGLLRTIGDG 133
>ATMG01250.1 | Symbols: ORF102 | hypothetical protein |
chrM:310514-310882 FORWARD
Length = 122
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/68 (57%), Positives = 49/68 (72%)
Query: 396 LLNGKEVGPIRPGRGLRQGDPLSPYLFLFCAEGLSLLFQDAKRRGRLQGVKVGRNCPSIT 455
++NG G + P RGLRQGDPLSPYLF+ C E LS L + A+ +GRL G++V N P I
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 456 HLLFADDS 463
HLLFADD+
Sbjct: 73 HLLFADDT 80
>AT1G43760.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
RNA-directed DNA polymerase (reverse transcriptase),
related (InterPro:IPR015706),
Endonuclease/exonuclease/phosphatase
(InterPro:IPR005135); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G40390.1); Has 2614
Blast hits to 2551 proteins in 44 species: Archae - 0;
Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086;
Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
| chr1:16528880-16531065 REVERSE
Length = 626
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 15/250 (6%)
Query: 60 CIKEMERWGRQFNKIFWKQKRIL-------KQRIENARDGFDDVTVQRLKNEWNTILFKE 112
C K + R G F I K K L Q + N D V + +WN
Sbjct: 375 CCKLLNRQG--FGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVE-HVARKKWNFFAAAL 431
Query: 113 ECRMRQIGKQRWLSWGDQNSKYFHASIKNRKRRAKILKLENEDGDIVQDNDSLEQITLNY 172
E RQ + +WL GD N+++FH I + + I L +D V++ ++++ + Y
Sbjct: 432 ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAY 491
Query: 173 FSTVYSAEESV----GIEIFNLVQP-KVTAIQNNILTTPFTLDEI*EAAFNMQPDKSPGP 227
++ + ++ + ++ + P + + L+ + EI A F M +K+PGP
Sbjct: 492 YTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGP 551
Query: 228 DGLNPAFFQKFWHVIGDDIWRDCKQWLDTGTFPKTLTDTHIVLLPKCDNPLSLKEYRPIS 287
D FF + W V+ D K++ TG K T I L+PK L +RP+S
Sbjct: 552 DSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVS 611
Query: 288 LCNVLYKIVA 297
C V+YKI+
Sbjct: 612 CCTVVYKIIT 621
>AT4G20520.1 | Symbols: | RNA binding / RNA-directed DNA polymerase
| chr4:11045912-11047716 FORWARD
Length = 376
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 300 LANRLKKILPLIIDECQSAFVPGRLISDNVAVAFELIHNIKSRKNQRGACALKIDISKAY 359
+ RLK ++ +I Q++F+PGR+ +DN+ E +H+++ +K +G LK+D+ KAY
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 360 DRVNWEFLRGMMLRMGFCEKWVQWMMLCVTDVKYSVLLNGKEVGPIRPGR-----GLRQG 414
DR+ W++L ++ GF E W+ + + G+ RP G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYD 120
Query: 415 DPLSPYL--FLFCAEGL 429
D +P+ + CAE L
Sbjct: 121 DMAAPFTSNSVACAELL 137
>AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
RNA-directed DNA polymerase (reverse transcriptase),
related (InterPro:IPR015706); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G23910.1);
Has 2302 Blast hits to 2235 proteins in 74 species:
Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12;
Plants - 1295; Viruses - 0; Other Eukaryotes - 105
(source: NCBI BLink). | chr3:8789471-8793208 FORWARD
Length = 746
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 528 YLGLPSLIGKSKKQVFGFLQDRLEKRIGNWSNRFLSRAGKEVLIKSIAQAIPTYCMSVFK 587
YLGLP L K +G L +++ RIG W+ R LS AG+ LI S+ ++ + MS F+
Sbjct: 27 YLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 86
Query: 588 IPLSICVTMQKRMNKFWWGKKEGGRRGIHWLAWERMCCSKREGGRGFRDLHCFN 641
+P + + + F W E + +AW +C K EGG G R L N
Sbjct: 87 LPSACIKEIDSICSSFLWSGPELNTKKAK-VAWSDVCTPKDEGGLGIRSLKEAN 139
>AT2G02650.1 | Symbols: | reverse transcriptase-related |
chr2:735411-736546 FORWARD
Length = 365
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 794 VRSGYYVARR---LLRGRVHEVDGGWWGK--MWCLDASPKDKDFMWRALRNVLPTKERLR 848
+RSGY+VA L + G K +W L +PK K F+WR + L T RLR
Sbjct: 6 LRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65
Query: 849 RRGVEVDIGCPWCG-EEEDINHAIVLCSKAKGVWRQGGYEVGD 890
R ++ D C C EEE I+H + C + VWR +G+
Sbjct: 66 SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGN 108
>AT3G25270.1 | Symbols: | nucleic acid binding | chr3:9203934-9204965
REVERSE
Length = 343
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 12/224 (5%)
Query: 818 GKMWCLDASPKDKDFMWRALRNVLPTKERLRRRGVEVDIGCPWCGEEEDIN-HAIVLCSK 876
K+W L +PK K F+W+ L L T + L+RR + C C +E++ + H C
Sbjct: 16 AKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFY 75
Query: 877 AKGVWRQGG---YEVGDINISFTNFFLQVLAHGDKIKSQHFLVYARYI----WMARNNAL 929
A+ VWR G E+ I+ +L+ + A +I W +RN +
Sbjct: 76 AQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLV 135
Query: 930 WNNIRDTCYTTFLKAKEYMISWEHTKLAQRSMASESSNTSRQRHAIFPPGRLSNSGDQSW 989
+ + T +A+ + WE T +S+ ++ ++SR + +
Sbjct: 136 FQQKSISWQNTLQRARNDVQEWEDTNTYVQSL-NQQVHSSRHQQPTMARTKWQRPPSTWI 194
Query: 990 QAFVDGSIFEQEGMQGFGAVMESEEGIFI---QAISGHFTGGMD 1030
+ DG+ Q G +M E G+++ QAI + ++
Sbjct: 195 KYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLE 238
>AT1G10000.1 | Symbols: | nucleic acid binding / ribonuclease H |
chr1:3263877-3264788 REVERSE
Length = 303
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 827 PKDKDFMWRALRNVLPTKERLRRRGVEVDIGCPWCGEEEDINHAIVLCSKAKGVWRQGGY 886
PK K F+W+A LP +L RR + C CG E H + C A VW
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 887 EVGDINISFTNFFLQVLAHGDKI---------KSQHFLVYARYIWMARNNALWNNIRDTC 937
++G I I L+ L K + F +IW ARN ++ N +
Sbjct: 62 QLGHIPIGTP--ILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSV 119
Query: 938 YTTFLKAKEYMISWEHTKLA 957
T KA + ++W+ +LA
Sbjct: 120 IETVTKAVQDALAWQSAQLA 139
>AT3G26855.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
RNA-directed DNA polymerase (reverse transcriptase),
related (InterPro:IPR015706); BEST Arabidopsis thaliana
protein match is: reverse transcriptase-related
(TAIR:AT2G02650.1); Has 97 Blast hits to 97 proteins in
6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr3:9898680-9899350 REVERSE
Length = 163
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 816 WWGKMWCLDASPKDKDFMWRALRNVLPTKERLRRRGVEVDIGCPWCGEEEDINHAIVLCS 875
W G +W L SPK K +W+AL N LP +L R + ++ C C + E I H + C
Sbjct: 5 WIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNCP 64
Query: 876 KAK 878
A+
Sbjct: 65 FAQ 67