Jatropha Genome Database

JcCA0028681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028681.10 - phase: 0 /partial
         (468 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | IMS1 (2-ISOPROPYLMA...   721   0.0  
AT1G18500.1 | Symbols: MAML-4, IPMS1 | MAML-4 (METHYLTHIOALKYLMA...   712   0.0  
AT5G23010.1 | Symbols: MAM1, IMS3 | MAM1 (METHYLTHIOALKYLMALATE ...   552   e-157
AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | IMS2 (2-ISOPROPYLMALA...   550   e-157

>AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | IMS1
           (2-ISOPROPYLMALATE SYNTHASE 1); 2-isopropylmalate
           synthase | chr1:27842258-27845566 FORWARD
          Length = 631

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/389 (86%), Positives = 368/389 (94%)

Query: 80  YIPNHIPDPFYVRVFDTTLRDGEQSPGATLTSKEKLDIARHLSKLGVDIIEAGFPAASND 139
           YIPN I DP YVR+FDTTLRDGEQSPGATLTSKEKLDIAR L+KLGVDIIEAGFPAAS D
Sbjct: 76  YIPNRISDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKD 135

Query: 140 DFEAVKTIAKEVGNAVDDEGYVPVICGLSRCNEKDIKTAWEAVKYAKRPRIHTFIATSEI 199
           DFEAVKTIA+ VGN VD+ GYVPVICGLSRCN+KDI+TAWEAVKYAKRPRIHTFIATS+I
Sbjct: 136 DFEAVKTIAETVGNTVDENGYVPVICGLSRCNKKDIETAWEAVKYAKRPRIHTFIATSDI 195

Query: 200 HMQYKLRKSKEEVVEIATNMVKFARSLGCDDVEFSPEDAGRSDREFLYHILGEVIKAGAT 259
           H++YKL+KSKEEV+EIA NMV+FARSLGC+DVEFSPEDAGRS+RE+LY ILGEVIKAGAT
Sbjct: 196 HLKYKLKKSKEEVIEIARNMVRFARSLGCEDVEFSPEDAGRSEREYLYEILGEVIKAGAT 255

Query: 260 TLNIPDTVGITLPSEFGQLIADIRANTPGIENVIISTHCQNDLGLSTANTLAGTYAGARQ 319
           TLNIPDTVGITLPSEFGQLIADI+ANTPGI+NVIISTHCQNDLGLSTANTL+G ++GARQ
Sbjct: 256 TLNIPDTVGITLPSEFGQLIADIKANTPGIQNVIISTHCQNDLGLSTANTLSGAHSGARQ 315

Query: 320 VEVTVNGIGERAGNASLEEVVMAIKCRGEHVLGGLYTGINSKHITMASKMVEEYTGLHVQ 379
           VEVT+NGIGERAGNASLEEVVMAIKCRG+HVLGGL+TGI+++HI M SKMVEEYTG+  Q
Sbjct: 316 VEVTINGIGERAGNASLEEVVMAIKCRGDHVLGGLFTGIDTRHIVMTSKMVEEYTGMQTQ 375

Query: 380 PHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPEDIGLERANDAGIVLGKLSGRHALKD 439
           PHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPE+IGLER+NDAGIVLGKLSGRHALKD
Sbjct: 376 PHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPEEIGLERSNDAGIVLGKLSGRHALKD 435

Query: 440 RLKELGYELSDEQLGNIFWRFKSVAENKK 468
           RL ELGY L D QL N+FWRFK+VAE KK
Sbjct: 436 RLNELGYVLDDGQLSNLFWRFKAVAEQKK 464


>AT1G18500.1 | Symbols: MAML-4, IPMS1 | MAML-4
           (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4);
           2-isopropylmalate synthase | chr1:6369347-6372861
           FORWARD
          Length = 631

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/390 (84%), Positives = 366/390 (93%)

Query: 79  EYIPNHIPDPFYVRVFDTTLRDGEQSPGATLTSKEKLDIARHLSKLGVDIIEAGFPAASN 138
           EYIPN I DP YVRVFDTTLRDGEQSPGATLTSKEKLDIAR L+KLGVDIIEAGFPAAS 
Sbjct: 77  EYIPNRISDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK 136

Query: 139 DDFEAVKTIAKEVGNAVDDEGYVPVICGLSRCNEKDIKTAWEAVKYAKRPRIHTFIATSE 198
           DDFEAVKTIA+ VGN VD+ GYVPVICGLSRCN+KDI+ AW+AVKYAKRPRIHTFIATS+
Sbjct: 137 DDFEAVKTIAETVGNTVDENGYVPVICGLSRCNKKDIERAWDAVKYAKRPRIHTFIATSD 196

Query: 199 IHMQYKLRKSKEEVVEIATNMVKFARSLGCDDVEFSPEDAGRSDREFLYHILGEVIKAGA 258
           IH++YKL+K+K EV+EIA +MV+FARSLGC+DVEFSPEDAGRS+RE+LY ILGEVIKAGA
Sbjct: 197 IHLEYKLKKTKAEVIEIARSMVRFARSLGCEDVEFSPEDAGRSEREYLYEILGEVIKAGA 256

Query: 259 TTLNIPDTVGITLPSEFGQLIADIRANTPGIENVIISTHCQNDLGLSTANTLAGTYAGAR 318
           TTLNIPDTVGITLPSEFGQLI D++ANTPGIENV+ISTHCQNDLGLSTANTL+G +AGAR
Sbjct: 257 TTLNIPDTVGITLPSEFGQLITDLKANTPGIENVVISTHCQNDLGLSTANTLSGAHAGAR 316

Query: 319 QVEVTVNGIGERAGNASLEEVVMAIKCRGEHVLGGLYTGINSKHITMASKMVEEYTGLHV 378
           Q+EVT+NGIGERAGNASLEEVVMAIKCRG+HVLGGL+TGI+++HI M SKMVEEYTG+  
Sbjct: 317 QMEVTINGIGERAGNASLEEVVMAIKCRGDHVLGGLFTGIDTRHIVMTSKMVEEYTGMQT 376

Query: 379 QPHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPEDIGLERANDAGIVLGKLSGRHALK 438
           QPHKAIVGANAFAHESGIHQDGMLKHKGTYEI+ PE+IGLER+NDAGIVLGKLSGRHALK
Sbjct: 377 QPHKAIVGANAFAHESGIHQDGMLKHKGTYEIICPEEIGLERSNDAGIVLGKLSGRHALK 436

Query: 439 DRLKELGYELSDEQLGNIFWRFKSVAENKK 468
           DRL ELGY+L DEQL  IFWRFK+VAE KK
Sbjct: 437 DRLTELGYQLDDEQLSTIFWRFKTVAEQKK 466


>AT5G23010.1 | Symbols: MAM1, IMS3 | MAM1 (METHYLTHIOALKYLMALATE
           SYNTHASE 1); 2-isopropylmalate synthase/
           methylthioalkylmalate synthase | chr5:7703173-7706769
           FORWARD
          Length = 506

 Score =  552 bits (1423), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 250/391 (63%), Positives = 325/391 (83%), Gaps = 1/391 (0%)

Query: 79  EYIPNHIPDPFYVRVFDTTLRDGEQSPGATLTSKEKLDIARHLSKLGVDIIEAGFPAASN 138
           EYIPN +PD  YVRVFDTTLRDGEQSPG +LT  +KL+IAR L+KL VDI+E GFP +S 
Sbjct: 73  EYIPNKLPDGNYVRVFDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSE 132

Query: 139 DDFEAVKTIAKEVGNAVDDE-GYVPVICGLSRCNEKDIKTAWEAVKYAKRPRIHTFIATS 197
           ++ E +KTIAK VGN VD+E GYVPVIC ++RC  +DI+  WEA+KYAKRPRI  F +TS
Sbjct: 133 EELETIKTIAKTVGNEVDEETGYVPVICAIARCKHRDIEATWEALKYAKRPRILVFTSTS 192

Query: 198 EIHMQYKLRKSKEEVVEIATNMVKFARSLGCDDVEFSPEDAGRSDREFLYHILGEVIKAG 257
           +IHM+YKL+K++EEV+E+A + ++FA+SLG +D++F  ED GRSD++FL  ILGE IKAG
Sbjct: 193 DIHMKYKLKKTQEEVIEMAVSSIRFAKSLGFNDIQFGCEDGGRSDKDFLCKILGEAIKAG 252

Query: 258 ATTLNIPDTVGITLPSEFGQLIADIRANTPGIENVIISTHCQNDLGLSTANTLAGTYAGA 317
            T + I DTVGI +P E+G+L+  ++ANTPGI++V+++ HC NDLGL+TAN++AG  AGA
Sbjct: 253 VTVVTIGDTVGINMPHEYGELVTYLKANTPGIDDVVVAVHCHNDLGLATANSIAGIRAGA 312

Query: 318 RQVEVTVNGIGERAGNASLEEVVMAIKCRGEHVLGGLYTGINSKHITMASKMVEEYTGLH 377
           RQVEVT+NGIGER+GNASLEEVVMA+KCRG +V+ G+YT I+++ I   SKMV+EYTGL+
Sbjct: 313 RQVEVTINGIGERSGNASLEEVVMALKCRGAYVINGVYTKIDTRQIMATSKMVQEYTGLY 372

Query: 378 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPEDIGLERANDAGIVLGKLSGRHAL 437
           VQ HK IVGAN F HESGIHQDG+LK++ TYEI+SPEDIG+ ++ ++G+VLGKLSGRHA+
Sbjct: 373 VQAHKPIVGANCFVHESGIHQDGILKNRSTYEILSPEDIGIVKSQNSGLVLGKLSGRHAV 432

Query: 438 KDRLKELGYELSDEQLGNIFWRFKSVAENKK 468
           KDRLKELGYEL DE+L  +F  F+ + +NKK
Sbjct: 433 KDRLKELGYELDDEKLNAVFSLFRDLTKNKK 463


>AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | IMS2 (2-ISOPROPYLMALATE
           SYNTHASE 2); 2-isopropylmalate synthase/
           methylthioalkylmalate synthase | chr5:7718203-7721634
           FORWARD
          Length = 503

 Score =  550 bits (1417), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 248/391 (63%), Positives = 325/391 (83%), Gaps = 1/391 (0%)

Query: 79  EYIPNHIPDPFYVRVFDTTLRDGEQSPGATLTSKEKLDIARHLSKLGVDIIEAGFPAASN 138
           EYIPN +P   YVRV DTTLRDGEQSPGA LT  +KL+IAR L+KL VDI+E GFP +S 
Sbjct: 73  EYIPNKLPHKNYVRVLDTTLRDGEQSPGAALTPPQKLEIARQLAKLRVDIMEVGFPVSSE 132

Query: 139 DDFEAVKTIAKEVGNAVDDE-GYVPVICGLSRCNEKDIKTAWEAVKYAKRPRIHTFIATS 197
           ++FEA+KTIAK VGN VD+E GYVPVICG++RC ++DI+  WEA+KYAKRPR+  F +TS
Sbjct: 133 EEFEAIKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEATWEALKYAKRPRVMLFTSTS 192

Query: 198 EIHMQYKLRKSKEEVVEIATNMVKFARSLGCDDVEFSPEDAGRSDREFLYHILGEVIKAG 257
           EIHM+YKL+K+KEEV+E+A N VK+A+SLG  D++F  ED GR++++F+  ILGE IKAG
Sbjct: 193 EIHMKYKLKKTKEEVIEMAVNSVKYAKSLGFKDIQFGCEDGGRTEKDFICKILGESIKAG 252

Query: 258 ATTLNIPDTVGITLPSEFGQLIADIRANTPGIENVIISTHCQNDLGLSTANTLAGTYAGA 317
           ATT+   DTVGI +P EFG+L+A +  NTPG ++++ + HC NDLG++TANT++G  AGA
Sbjct: 253 ATTVGFADTVGINMPQEFGELVAYVIENTPGADDIVFAIHCHNDLGVATANTISGICAGA 312

Query: 318 RQVEVTVNGIGERAGNASLEEVVMAIKCRGEHVLGGLYTGINSKHITMASKMVEEYTGLH 377
           RQVEVT+NGIGER+GNA LEEVVMA+KCRGE ++ G+YT I+S+ I   SKMV+E+TG++
Sbjct: 313 RQVEVTINGIGERSGNAPLEEVVMALKCRGESLMDGVYTKIDSRQIMATSKMVQEHTGMY 372

Query: 378 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPEDIGLERANDAGIVLGKLSGRHAL 437
           VQPHK IVG N F HESGIHQDG+LK++ TYEI+SPED+G+ ++ ++GIVLGKLSGRHA+
Sbjct: 373 VQPHKPIVGDNCFVHESGIHQDGILKNRSTYEILSPEDVGIVKSENSGIVLGKLSGRHAV 432

Query: 438 KDRLKELGYELSDEQLGNIFWRFKSVAENKK 468
           KDRLKELGYE+SDE+  +IF R++ + ++KK
Sbjct: 433 KDRLKELGYEISDEKFNDIFSRYRELTKDKK 463