Jatropha Genome Database

JcCA0028161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028161.10 - phase: 0 /partial
         (527 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06830.1 | Symbols:  | unknown protein | chr5:2116882-2119559...   626   e-179

>AT5G06830.1 | Symbols:  | unknown protein | chr5:2116882-2119559
           REVERSE
          Length = 549

 Score =  626 bits (1614), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/527 (62%), Positives = 383/527 (72%), Gaps = 21/527 (3%)

Query: 1   MQTPDDIRNLPIDITFSRLGEWLVDRKRVPADWRKRIAAVRARISKEFSSLPKDIDPYFQ 60
           M + DD++NLPIDITFSRLGEWLVDRKR+PADWRKR+A +R +I KEFSSLPK+IDP+FQ
Sbjct: 1   MPSQDDVQNLPIDITFSRLGEWLVDRKRIPADWRKRVAVIRVKILKEFSSLPKEIDPFFQ 60

Query: 61  TLDPEGIGYLEAKKIYDVLVKKTPESRNIFGRLSGAAGAWEAIVHSFEKDYIYLGEAAQI 120
           TLDPE IGYLE KK+Y++L+K TPESRNIFGRLSGA+G WEAIV +FEKD+IYLGEAAQI
Sbjct: 61  TLDPEVIGYLEVKKVYEILLKTTPESRNIFGRLSGASGVWEAIVRAFEKDHIYLGEAAQI 120

Query: 121 IIQNVNYEIPYXXXXXXXXXXXLAELERKEADIKRSASLSAAKYIEACQELGLQGNNVRS 180
           IIQNVNYEIPY           + EL+RKEADIKRS +LSA KY +AC+ELGLQGNNVR 
Sbjct: 121 IIQNVNYEIPYLKKQVQKVQQQMTELDRKEADIKRSVALSATKYEDACRELGLQGNNVRR 180

Query: 181 ELLETAKSLPGTFSRILEVINSDSLLRAIEYYSTFVKDVHTEKDKSSWTILLNLKDIREN 240
           ELLETA SLP TFS+ILEVINSDS+  A+EYYS +V+DVHTEKDK    +L NLK IREN
Sbjct: 181 ELLETASSLPSTFSKILEVINSDSVTGAMEYYSAYVQDVHTEKDKPLRIVLQNLKYIREN 240

Query: 241 PPSLNVSAGPEILDAANVQLSFDESSHVRGXXXXXXXXXXXXXXXXXAQIDWDIGVVEET 300
           PPSL+V    E LDA N+Q     SS                      +IDWD+ +VEE 
Sbjct: 241 PPSLSVFGDSEGLDADNIQ-----SSENANGTDAAADSIDWDITVETPEIDWDVSMVEEV 295

Query: 301 DDGGNGLGPYEIVNASDILQSSSQNEAVESERTPLNKGEDSLHPEVSVSEISWDISVETP 360
            D GN LG YEIVNASDI            E +P  K E+S   EV VSEISWD+SVETP
Sbjct: 296 -DSGNDLGSYEIVNASDI-----------PENSPF-KVEESQGLEVDVSEISWDVSVETP 342

Query: 361 QVDVIDDVNLLNGSLENPTFVPDSLMHNAGVKEERSQLLETEYRNKLLDDLYEIKAFLSQ 420
           QV+ I D  LL     N T + DS     G   ERSQLLETEYRNK+LDDLYE+KAFL+Q
Sbjct: 343 QVEEIGDSALLES---NQTQLTDSTTQVLGSGGERSQLLETEYRNKILDDLYEVKAFLNQ 399

Query: 421 RLTELRNEETLSLQHQVQSVAPLVVQQYTPDAIETMLSDVFLVISLLTNRKTRDLIMILN 480
           RL ELRNE+TLSLQH VQ+V+P+V+QQY+P+ IE M+ D+ + ISLLTN+K+RDLIMILN
Sbjct: 400 RLIELRNEDTLSLQHHVQAVSPMVLQQYSPETIEPMVVDISMAISLLTNKKSRDLIMILN 459

Query: 481 SRRFLDRLVSSXXXXXXXXXXXXXXXXDLAAKRMELHNSLSSSWPKQ 527
           S+RFLDRLVS                 D+  +RMEL NSLS+ WPKQ
Sbjct: 460 SKRFLDRLVSELEEKKHREVKLRESLKDVGRRRMELQNSLSAIWPKQ 506