Jatropha Genome Database
- JcCA0025111.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0025111.30 + phase: 0
(157 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45660.1 | Symbols: AGL20, SOC1 | AGL20 (AGAMOUS-LIKE 20); tr... 105 8e-24
AT5G62165.3 | Symbols: AGL42 | AGL42 (AGAMOUS LIKE 42); transcri... 82 2e-16
AT5G62165.2 | Symbols: AGL42 | AGL42 (AGAMOUS LIKE 42); transcri... 82 2e-16
AT5G62165.1 | Symbols: AGL42 | AGL42 (AGAMOUS LIKE 42); transcri... 82 2e-16
AT4G22950.1 | Symbols: AGL19, GL19 | AGL19 (AGAMOUS-LIKE 19); tr... 62 1e-10
AT4G11880.1 | Symbols: AGL14 | AGL14 (agamous-like 14); DNA bind... 55 3e-08
AT5G51860.2 | Symbols: | MADS-box protein (AGL72) | chr5:210818... 49 2e-06
AT5G51870.1 | Symbols: AGL71 | AGL71 (AGAMOUS-LIKE 71); transcri... 46 9e-06
>AT2G45660.1 | Symbols: AGL20, SOC1 | AGL20 (AGAMOUS-LIKE 20);
transcription factor | chr2:18807799-18810193 REVERSE
Length = 214
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 1 MQGTIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXX 60
MQ TI+R+ +H KD TK +++ENMQHLK EAA+M+KKIE LE +KRK
Sbjct: 62 MQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSI 121
Query: 61 XXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFKQ 120
+SV IRARK QVFKEQIE+L++KE+ LAAEN +LSEK G + +
Sbjct: 122 EELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSN 181
Query: 121 LGEQNM--XXXXXXXXXXXXXXLFIGLP 146
+++ LFIGLP
Sbjct: 182 KNQESTGRGDEESSPSSEVETQLFIGLP 209
>AT5G62165.3 | Symbols: AGL42 | AGL42 (AGAMOUS LIKE 42);
transcription factor | chr5:24965075-24968437 FORWARD
Length = 210
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 1 MQGTIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXX 60
MQ TIER+RK+ KD + + + ++Q LK EA+ M+ KIE LE KRK
Sbjct: 62 MQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCSL 121
Query: 61 XXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFKQ 120
RS+ +R RK Q+FKEQ+E+L+ KE+ L EN +L +K I P +G
Sbjct: 122 EELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRG-SS 180
Query: 121 LGEQNMXXXXXXXXXXXXXXLFIGLPETRNKRC 153
+Q LFIGLP N+ C
Sbjct: 181 TDQQQEKYKVIDLNLEVETDLFIGLP---NRNC 210
>AT5G62165.2 | Symbols: AGL42 | AGL42 (AGAMOUS LIKE 42);
transcription factor | chr5:24965075-24968437 FORWARD
Length = 210
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 1 MQGTIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXX 60
MQ TIER+RK+ KD + + + ++Q LK EA+ M+ KIE LE KRK
Sbjct: 62 MQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCSL 121
Query: 61 XXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFKQ 120
RS+ +R RK Q+FKEQ+E+L+ KE+ L EN +L +K I P +G
Sbjct: 122 EELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRG-SS 180
Query: 121 LGEQNMXXXXXXXXXXXXXXLFIGLPETRNKRC 153
+Q LFIGLP N+ C
Sbjct: 181 TDQQQEKYKVIDLNLEVETDLFIGLP---NRNC 210
>AT5G62165.1 | Symbols: AGL42 | AGL42 (AGAMOUS LIKE 42);
transcription factor | chr5:24965075-24968437 FORWARD
Length = 210
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 1 MQGTIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXX 60
MQ TIER+RK+ KD + + + ++Q LK EA+ M+ KIE LE KRK
Sbjct: 62 MQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCSL 121
Query: 61 XXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFKQ 120
RS+ +R RK Q+FKEQ+E+L+ KE+ L EN +L +K I P +G
Sbjct: 122 EELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRG-SS 180
Query: 121 LGEQNMXXXXXXXXXXXXXXLFIGLPETRNKRC 153
+Q LFIGLP N+ C
Sbjct: 181 TDQQQEKYKVIDLNLEVETDLFIGLP---NRNC 210
>AT4G22950.1 | Symbols: AGL19, GL19 | AGL19 (AGAMOUS-LIKE 19);
transcription factor | chr4:12023946-12027421 REVERSE
Length = 219
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 1 MQGTIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXX 60
+ TIER+++ +K+ K D N Q + E + + KKIE LE +KRK
Sbjct: 62 IAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSI 120
Query: 61 XXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKC-GIQPLQGFK 119
RS+S IRA+K Q+ +E+IE+L+ +ER L EN L EK G+
Sbjct: 121 EELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIAS 180
Query: 120 QLGEQNMXXXXXXXXXXXXXXLFIGLPETR-NKRCRPRN 157
+ LFIG PETR +K+ P+N
Sbjct: 181 SQSTLSSSEVNIDDNMEVETGLFIGPPETRQSKKFPPQN 219
>AT4G11880.1 | Symbols: AGL14 | AGL14 (agamous-like 14); DNA binding
/ transcription factor | chr4:7143512-7147108 FORWARD
Length = 221
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 4 TIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXXXXX 63
T+ER++K ++D K D N Q K E + +KIEHLE + RK
Sbjct: 66 TVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEEL 124
Query: 64 XXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFKQLGE 123
RS+ IRA+K Q+ +E+ E+L+EKER L AEN L EKC +Q ++
Sbjct: 125 QQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIGRISS 184
Query: 124 QNMXX--XXXXXXXXXXXXLFIGLPETRN-KRCRPRN 157
+ LFIG PETR+ K+ P N
Sbjct: 185 SSSTSELDIDDNEMEVVTDLFIGPPETRHFKKFPPSN 221
>AT5G51860.2 | Symbols: | MADS-box protein (AGL72) |
chr5:21081844-21084126 REVERSE
Length = 202
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 1 MQGTIERFRKHVKDTQVTKK-ITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXX 59
++ TI+R+ ++ ++ V + ++ +Q LK E +MVKKIE LE RK
Sbjct: 62 IRNTIKRYAEYKREYFVAETHPIEQYVQGLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCS 121
Query: 60 XXXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPL 115
+S+ +R RK +++++++++L+ KER L E RLS K G +P+
Sbjct: 122 VKELSEIATQIEKSLHMVRLRKAKLYEDELQKLKAKERELKDERVRLSLKVGERPM 177
>AT5G51870.1 | Symbols: AGL71 | AGL71 (AGAMOUS-LIKE 71);
transcription factor | chr5:21085635-21087923 REVERSE
Length = 207
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 1 MQGTIERFRKHVKDTQVTKKI-TDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXX 59
M+ I+R+ K V ++ + +Q LK E MVKKI+ LE RK
Sbjct: 62 MEKIIDRYGKFSNAFYVAERPQVERYLQELKMEIDRMVKKIDLLEVHHRKLLGQGLDSCS 121
Query: 60 XXXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGI-QPLQGF 118
+S+ +R+RK +++ +Q+++L+EKER L E RL E+ + +G
Sbjct: 122 VTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLLEEVNMHHSSKGN 181
Query: 119 KQLGEQNMXXXXXXXXXXXXXXLFIGLPETR 149
+ G + LFIGLP TR
Sbjct: 182 TEGGHRT------KHSSEVETDLFIGLPVTR 206