Jatropha Genome Database

JcCA0022221.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.30 + phase: 0 
         (296 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53000.1 | Symbols:  | cytidylyltransferase family | chr1:197...   451   e-127

>AT1G53000.1 | Symbols:  | cytidylyltransferase family |
           chr1:19745330-19747133 REVERSE
          Length = 290

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/257 (83%), Positives = 227/257 (88%)

Query: 40  YLARSRNFRSRVVGIIPARFASSRFQGKPLVQILGKPMIQRTWERAKLATTLDHIVVATD 99
           YL RS+ FRSRVVGIIPAR+ASSRF+GKPLVQILGKPMIQRTWER+KLATTLDHIVVATD
Sbjct: 34  YLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPMIQRTWERSKLATTLDHIVVATD 93

Query: 100 DEKIAECCRGFGADVIMTSESCRNGTERCNEALGKLEKKYDVVVNIQGDEPLIEPEIIDG 159
           DE+IAECCRGFGADVIMTSESCRNGTERCNEAL KLEKKYDVVVNIQGDEPLIEPEIIDG
Sbjct: 94  DERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIEPEIIDG 153

Query: 160 IVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNRGYAIYFSRGLIPYNKSGKVNQQ 219
           +VKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDNRGYAIYFSRGLIPYNKSGKVN  
Sbjct: 154 VVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKSGKVNPD 213

Query: 220 FPYLLHLGIQSYDAKFLKIYXXXXXXXXXXXXXXXXXXXXXNGYKMKVMKVDHEAHGVDT 279
           FPY+LHLGIQS+D+KFLK+Y                     NGYKMKV+KVDHEAHGVDT
Sbjct: 214 FPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHEAHGVDT 273

Query: 280 PDDVEKIETLMRERNLS 296
           PDDVEKIE+LMRERN+S
Sbjct: 274 PDDVEKIESLMRERNMS 290