Jatropha Genome Database

JcCA0020851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020851.10 - phase: 0 
         (194 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46970.1 | Symbols:  | invertase/pectin methylesterase inhibi...    50   1e-06

>AT5G46970.1 | Symbols:  | invertase/pectin methylesterase inhibitor
           family protein | chr5:19063918-19064412 REVERSE
          Length = 164

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 46  IFFFALFFPMISTSHQKGSDLINRSCEKT------LYKDNCEEALAAGRTNDMPSLTKDA 99
           +F+FA+FF ++  +      LI   C+K       ++ + C ++L     +         
Sbjct: 4   LFYFAMFF-LLLNAFTIAQSLIQDFCKKAADKNPKIHYNFCVKSLEENPQSKTARSLDRL 62

Query: 100 LEIASLSATEISKAITGMLDR----TSFEFVKER-LRDCSKIYKSSIDQIKKAKVVVDSK 154
           + +++ +A   + ++ G++D+      FE   E+ LRDC ++Y  + + +K+A  ++ S+
Sbjct: 63  VMLSTKNAVSKTTSMKGIVDKILKENRFEMYSEKPLRDCLELYSDATNSLKEALTIIKSR 122

Query: 155 AYNDVNTLATVVITGSESCEDGFHE 179
            Y   N + +  +    SCE GF E
Sbjct: 123 DYKTANVVISAAMGAPPSCEIGFKE 147