Jatropha Genome Database

JcCA0020841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020841.10 + phase: 0 /partial
         (79 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23100.1 | Symbols: RML1, PAD2, GSH1, CAD2, ATECS1, GSHA | GS...   147   1e-36
AT4G23100.2 | Symbols: RML1, PAD2, GSH1, CAD2 | GSH1 (GLUTAMATE-...    55   1e-08

>AT4G23100.1 | Symbols: RML1, PAD2, GSH1, CAD2, ATECS1, GSHA | GSH1
           (GLUTAMATE-CYSTEINE LIGASE); glutamate-cysteine ligase |
           chr4:12103458-12106751 REVERSE
          Length = 522

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/79 (88%), Positives = 76/79 (96%)

Query: 1   VPVTGLKTPFRDGLLRHVAEDVLQLAKDGLQRRGFKEVGFLNEVAEVVRTGVTPAEKLLE 60
           VPVTGLKTPFRDGLL+HVAEDVL+LAKDGL+RRG+KE GFLN V EVVRTGVTPAEKLLE
Sbjct: 444 VPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEAGFLNAVDEVVRTGVTPAEKLLE 503

Query: 61  LYNGKWGQSVDPVFEELLY 79
           +YNG+WGQSVDPVFEELLY
Sbjct: 504 MYNGEWGQSVDPVFEELLY 522


>AT4G23100.2 | Symbols: RML1, PAD2, GSH1, CAD2 | GSH1
           (GLUTAMATE-CYSTEINE LIGASE); glutamate-cysteine ligase |
           chr4:12103779-12106751 REVERSE
          Length = 477

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 27/27 (100%)

Query: 1   VPVTGLKTPFRDGLLRHVAEDVLQLAK 27
           VPVTGLKTPFRDGLL+HVAEDVL+LAK
Sbjct: 444 VPVTGLKTPFRDGLLKHVAEDVLKLAK 470