Jatropha Genome Database
- JcCA0020831.40
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0020831.40 + phase: 2 /TE
(1057 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359... 75 2e-13
AT3G01410.2 | Symbols: | RNase H domain-containing protein | ch... 70 7e-12
AT3G01410.1 | Symbols: | RNase H domain-containing protein | ch... 70 7e-12
AT5G51080.2 | Symbols: | RNase H domain-containing protein | ch... 66 1e-10
AT5G51080.1 | Symbols: | RNase H domain-containing protein | ch... 66 1e-10
AT5G51080.3 | Symbols: | RNase H domain-containing protein | ch... 65 2e-10
AT1G24090.1 | Symbols: | RNase H domain-containing protein | ch... 60 1e-08
>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
chrM:235916-236392 FORWARD
Length = 158
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 230 NPAKCLFGATSGVFL--RHMVSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISR 287
N KC FG +L RH++S +G+ DP+K +A++ P PK+ E+RGFLG Y R
Sbjct: 19 NRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRR 78
Query: 288 FINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLL 342
F+ P+ +LL+K ++KW E AF +K + + P+L P L P +
Sbjct: 79 FVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132
>AT3G01410.2 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 294
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 483 ESEVWEMYFDGAS--NYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEA 540
+++ + FDGAS N G G V + + + N TNN AEY A + GL +
Sbjct: 151 QNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRS 210
Query: 541 ALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKN 600
AL+KG K + V GDS L+ Q WK ++ ++ EL F+ ++ R KN
Sbjct: 211 ALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKN 270
Query: 601 QFADALATLASMVNVGGDQVI 621
AD A A + G QVI
Sbjct: 271 SEADKQANSAIFLADGQTQVI 291
>AT3G01410.1 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 294
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 483 ESEVWEMYFDGAS--NYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEA 540
+++ + FDGAS N G G V + + + N TNN AEY A + GL +
Sbjct: 151 QNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRS 210
Query: 541 ALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKN 600
AL+KG K + V GDS L+ Q WK ++ ++ EL F+ ++ R KN
Sbjct: 211 ALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKN 270
Query: 601 QFADALATLASMVNVGGDQVI 621
AD A A + G QVI
Sbjct: 271 SEADKQANSAIFLADGQTQVI 291
>AT5G51080.2 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 322
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 466 EDQMPEVEFPDEDLLSLESEVWEMY------FDGAS--NYHGNGVGVVFKTPCGEYIPIA 517
+DQ+P E L LE Y FDGAS N +G V KT G I
Sbjct: 159 QDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKM 218
Query: 518 VKLDFNCTNNEAEYEACIKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYL 577
+ TNN AEY I GL+ A+EKG +KV DS L+ Q +WK+ E L
Sbjct: 219 RQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLH 278
Query: 578 RRLDELAQQFEDLSFHYLPRAKNQFADALATLASMVNVGGDQV 620
+ +L+ + ++ R+ N AD A +A+ ++ G +V
Sbjct: 279 KEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEV 321
>AT5G51080.1 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 322
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 466 EDQMPEVEFPDEDLLSLESEVWEMY------FDGAS--NYHGNGVGVVFKTPCGEYIPIA 517
+DQ+P E L LE Y FDGAS N +G V KT G I
Sbjct: 159 QDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKM 218
Query: 518 VKLDFNCTNNEAEYEACIKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYL 577
+ TNN AEY I GL+ A+EKG +KV DS L+ Q +WK+ E L
Sbjct: 219 RQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLH 278
Query: 578 RRLDELAQQFEDLSFHYLPRAKNQFADALATLASMVNVGGDQV 620
+ +L+ + ++ R+ N AD A +A+ ++ G +V
Sbjct: 279 KEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEV 321
>AT5G51080.3 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770486 REVERSE
Length = 259
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 466 EDQMPEVEFPDEDLLSLESEVWEMY------FDGAS--NYHGNGVGVVFKTPCGEYIPIA 517
+DQ+P E L LE Y FDGAS N +G V KT G I
Sbjct: 96 QDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKM 155
Query: 518 VKLDFNCTNNEAEYEACIKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYL 577
+ TNN AEY I GL+ A+EKG +KV DS L+ Q +WK+ E L
Sbjct: 156 RQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLH 215
Query: 578 RRLDELAQQFEDLSFHYLPRAKNQFADALATLASMVNVG 616
+ +L+ + ++ R+ N AD A +A+ ++ G
Sbjct: 216 KEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEG 254
>AT1G24090.1 | Symbols: | RNase H domain-containing protein |
chr1:8520834-8524690 FORWARD
Length = 535
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 466 EDQMPEVEF---PDEDLLSLE------SEVWEMYFDGAS--NYHGNGVGVVFKTPCGEYI 514
+DQ+P P E L +E E + FDGAS N +G V KT G I
Sbjct: 187 KDQLPSASISYDPLEKLSKVEPSAYISDETCFIEFDGASKGNPGLSGAAAVLKTEDGSLI 246
Query: 515 PIAVKLDFNCTNNEAEYEACIKGLEAALEKGIKILKVFGDSNLIVSQALR---KWKIKEE 571
+ TNN AEY A I GL+ A+EKG K +KV GDS L+ Q + +WK+ E
Sbjct: 247 CRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQKQQIKGQWKVNHE 306
Query: 572 RLVPYLRRLDELAQQFEDLSFHYLPRAKNQFADALATLA 610
L + L + ++ R N AD A LA
Sbjct: 307 VLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANLA 345