Jatropha Genome Database

JcCA0020761.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020761.30 + phase: 0 /partial
         (309 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3...   571   e-163

>AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1
           | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A);
           translation initiation factor | chr4:6947834-6952053
           REVERSE
          Length = 987

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 265/309 (85%), Positives = 287/309 (92%)

Query: 1   MATYAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYVELCVDM 60
           MA +AKPENALKRA+ELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKY++LCVD+
Sbjct: 1   MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60

Query: 61  RRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSXXXXXXXXXXXXXXX 120
           +RGRFAKDGLIQYRIVCQQVNV+SLEEVIKHF+HL+T+KAEQARS               
Sbjct: 61  KRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQARSQADALEEALDVDDLE 120

Query: 121 XXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180
             ++PEDL LS VSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH
Sbjct: 121 ADRKPEDLQLSIVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180

Query: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI 240
           +AFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRF+QLK+
Sbjct: 181 KAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFDQLKV 240

Query: 241 ATELELWQEAFRSIEDIHGLMCMVKKTPKPSLMVVYYAKLTEIFWISSSHLYHAYAWFKL 300
           ATEL LWQEAFRS+EDI+GLMCMVKKTPK SL++VYY+KLTEIFWISSSHLYHAYAWFKL
Sbjct: 241 ATELGLWQEAFRSVEDIYGLMCMVKKTPKSSLLMVYYSKLTEIFWISSSHLYHAYAWFKL 300

Query: 301 FTLQKSFNK 309
           F+LQK+FNK
Sbjct: 301 FSLQKNFNK 309