Jatropha Genome Database

JcCA0020761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020761.20 - phase: 0 
         (250 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27020.1 | Symbols:  | unknown protein | chr5:9508187-9508681...    60   2e-09

>AT5G27020.1 | Symbols:  | unknown protein | chr5:9508187-9508681
           FORWARD
          Length = 164

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 32/38 (84%), Gaps = 2/38 (5%)

Query: 210 GGEQQELCKKRILMGEKCRPLSYSGTLQYDKDGTLLPD 247
           G E++ELCKKRILMGE+C+P+  +G LQYD DG LLP+
Sbjct: 128 GMEEEELCKKRILMGERCKPM--NGVLQYDGDGILLPE 163