Jatropha Genome Database

JcCA0020601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.20 + phase: 0 
         (228 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35320.1 | Symbols:  | unknown protein | chr5:13521893-135231...    82   2e-16

>AT5G35320.1 | Symbols:  | unknown protein | chr5:13521893-13523144
           FORWARD
          Length = 225

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 105/240 (43%), Gaps = 41/240 (17%)

Query: 9   IKMKRKEXXXXXXXXXXXXXXXPARKIRRLDXXXXXXXXXXXXXXXXXXVFVGGVEEKQQ 68
           + MKRK+               PARKIRRLD                    +   EE   
Sbjct: 7   LSMKRKDIDRVNDDFSDFSLSSPARKIRRLDVDLPP---------------IMEEEEIDL 51

Query: 69  PMVDSGVG-------NQERAIVVFKPVKTNPXXXXXXXXXXXXXXXXXYGIKSQFLRSSC 121
           PM D+          N ERAIV+FKP+  +                   G K++FLR   
Sbjct: 52  PMQDTVAEEIELEPVNDERAIVLFKPLHYH----QPSSGNVFVDRHLISGFKNRFLRDVS 107

Query: 122 NGNIRLAEEEREATNECMAVVPWVPSQAAFARGIDT-SQAEAPDLMEAEQVGEETM---- 176
             +    E+ER   N+C AVV W PSQ+ +++ I T  Q    ++ E ++ GE+ +    
Sbjct: 108 IADDNQYEDER--LNKCQAVVCWNPSQSTYSQSIGTFQQPRTLEITELDETGEDVVMDDA 165

Query: 177 --EIEFE-GNNTIQSNELESGGMMSGTQ--GLPQWQQ-QHCLIPQLPQ--NTSTPITWFQ 228
             EIE + G+ ++   +         T   GL  WQQ Q+C+IPQLPQ   T TPITWF+
Sbjct: 166 SNEIEEDTGSTSLSFPQQGQQQEQEHTYGFGLHPWQQAQNCMIPQLPQVSTTPTPITWFR 225