Jatropha Genome Database

JcCA0020601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.10 - phase: 0 /partial
         (78 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10700.1 | Symbols:  | GHMP kinase family protein | chr3:3346...   111   1e-25

>AT3G10700.1 | Symbols:  | GHMP kinase family protein |
          chr3:3346789-3350863 REVERSE
          Length = 424

 Score =  111 bits (277), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/63 (76%), Positives = 57/63 (90%)

Query: 16 QLNRIRKVVSAMAGRSPEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINRGILLGFIPSG 75
          +LN I++ V+ M+GR   EVRVVV+PYRICPLGAHIDHQGGTVSAMTIN+GILLGF+PSG
Sbjct: 8  ELNSIKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG 67

Query: 76 DTK 78
          DT+
Sbjct: 68 DTQ 70