Jatropha Genome Database

JcCA0020581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020581.20 + phase: 2 /TE
         (950 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...    75   2e-13
AT3G01410.2 | Symbols:  | RNase H domain-containing protein | ch...    61   3e-09
AT3G01410.1 | Symbols:  | RNase H domain-containing protein | ch...    61   3e-09
AT5G51080.2 | Symbols:  | RNase H domain-containing protein | ch...    59   2e-08
AT5G51080.1 | Symbols:  | RNase H domain-containing protein | ch...    59   2e-08
AT5G51080.3 | Symbols:  | RNase H domain-containing protein | ch...    57   6e-08

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
           chrM:235916-236392 FORWARD
          Length = 158

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 123 NPVKCLFGATSGVFL--RHMVSRKGIEIDPSKAKAILEMPAPKTEKEVRGFLGRLQYISR 180
           N  KC FG     +L  RH++S +G+  DP+K +A++  P PK   E+RGFLG   Y  R
Sbjct: 19  NRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRR 78

Query: 181 FINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLL 235
           F+        P+ +LL+K  ++KW E    AF  +K  + + P+L  P L  P +
Sbjct: 79  FVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132


>AT3G01410.2 | Symbols:  | RNase H domain-containing protein |
           chr3:153650-155439 REVERSE
          Length = 294

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 384 FDGAS--NYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGIKV 441
           FDGAS  N    G G V +      +    +   + TNN AEY A + GL +AL+KG K 
Sbjct: 159 FDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKN 218

Query: 442 LKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFADALAT 501
           + V  DS L+  Q    WK    ++     +  EL   F+     ++ R KN  AD  A 
Sbjct: 219 VHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQAN 278

Query: 502 LASMVNIGGDQVI 514
            A  +  G  QVI
Sbjct: 279 SAIFLADGQTQVI 291


>AT3G01410.1 | Symbols:  | RNase H domain-containing protein |
           chr3:153650-155439 REVERSE
          Length = 294

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 384 FDGAS--NYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGIKV 441
           FDGAS  N    G G V +      +    +   + TNN AEY A + GL +AL+KG K 
Sbjct: 159 FDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKN 218

Query: 442 LKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFADALAT 501
           + V  DS L+  Q    WK    ++     +  EL   F+     ++ R KN  AD  A 
Sbjct: 219 VHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQAN 278

Query: 502 LASMVNIGGDQVI 514
            A  +  G  QVI
Sbjct: 279 SAIFLADGQTQVI 291


>AT5G51080.2 | Symbols:  | RNase H domain-containing protein |
           chr5:20769022-20770675 REVERSE
          Length = 322

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 359 EDQMPEVEFLDEDLLSFESEVWEMY------FDGAS--NYHGNGVGVVFKTPCGEYVPIA 410
           +DQ+P      E L   E      Y      FDGAS  N   +G   V KT  G  +   
Sbjct: 159 QDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKM 218

Query: 411 VKLDFDCTNNEAEYEACIKGLEAALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYL 470
            +     TNN AEY   I GL+ A+EKG   +KV  DS L+  Q   +WK+  E L    
Sbjct: 219 RQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLH 278

Query: 471 XRLDELAQXFEDLSFHYLPRAKNQFADALATLASMVNIGGDQV 513
               +L+         ++ R+ N  AD  A +A+ ++ G  +V
Sbjct: 279 KEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEV 321


>AT5G51080.1 | Symbols:  | RNase H domain-containing protein |
           chr5:20769022-20770675 REVERSE
          Length = 322

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 359 EDQMPEVEFLDEDLLSFESEVWEMY------FDGAS--NYHGNGVGVVFKTPCGEYVPIA 410
           +DQ+P      E L   E      Y      FDGAS  N   +G   V KT  G  +   
Sbjct: 159 QDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKM 218

Query: 411 VKLDFDCTNNEAEYEACIKGLEAALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYL 470
            +     TNN AEY   I GL+ A+EKG   +KV  DS L+  Q   +WK+  E L    
Sbjct: 219 RQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLH 278

Query: 471 XRLDELAQXFEDLSFHYLPRAKNQFADALATLASMVNIGGDQV 513
               +L+         ++ R+ N  AD  A +A+ ++ G  +V
Sbjct: 279 KEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEV 321


>AT5G51080.3 | Symbols:  | RNase H domain-containing protein |
           chr5:20769022-20770486 REVERSE
          Length = 259

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 359 EDQMPEVEFLDEDLLSFESEVWEMY------FDGAS--NYHGNGVGVVFKTPCGEYVPIA 410
           +DQ+P      E L   E      Y      FDGAS  N   +G   V KT  G  +   
Sbjct: 96  QDQLPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKM 155

Query: 411 VKLDFDCTNNEAEYEACIKGLEAALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYL 470
            +     TNN AEY   I GL+ A+EKG   +KV  DS L+  Q   +WK+  E L    
Sbjct: 156 RQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLH 215

Query: 471 XRLDELAQXFEDLSFHYLPRAKNQFADALATLASMVNIGGDQV 513
               +L+         ++ R+ N  AD  A +A+ ++ G  +V
Sbjct: 216 KEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEV 258