Jatropha Genome Database

JcCA0020441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020441.10 - phase: 0 /partial
         (227 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23230.1 | Symbols:  | unknown protein | chr1:8244481-8251741...   355   2e-98

>AT1G23230.1 | Symbols:  | unknown protein | chr1:8244481-8251741
            FORWARD
          Length = 1615

 Score =  355 bits (910), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 161/215 (74%), Positives = 193/215 (89%)

Query: 7    LAQLPPDFHMQLYMEASRIIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 66
            LAQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIG
Sbjct: 1393 LAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIG 1452

Query: 67   NIVALLHSFFSNLPQEWLEGTHVIIKHLKPITSVAMLRIAFRIMGPLLPRLANAHSLFSK 126
            NIVALLH+FFSNLPQEWL+GT+ II +L+P+TSVAMLR+ FRIMGPLLPRLA+ H+LF+K
Sbjct: 1453 NIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNK 1512

Query: 127  TLSLLLNTMAEVFGRNSQPSTPVEASEITDLIDFLHHVIHYEGQGGPVQANSKPRPEVLA 186
            TL LLL+ + +VFG+ +Q + PVEAS+I DLIDFLHH+IHYEGQGG VQ +SKPRP++LA
Sbjct: 1513 TLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILA 1572

Query: 187  LCGRAAENLRPDIQHLLSHLKPDTNSSIYAATHPK 221
            L GRAAE LRPD+QHLL+HLK + NSSIYAA H +
Sbjct: 1573 LIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAHQQ 1607