Jatropha Genome Database

JcCA0020001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020001.20 - phase: 0 
         (470 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28237.1 | Symbols:  | tryptophan synthase, beta subunit, put...   600   e-172
AT4G27070.1 | Symbols: TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUB...   565   e-161
AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPH...   557   e-159
AT5G38530.1 | Symbols:  | tryptophan synthase-related | chr5:154...   107   2e-23

>AT5G28237.1 | Symbols:  | tryptophan synthase, beta subunit,
           putative | chr5:10207477-10213542 REVERSE
          Length = 465

 Score =  600 bits (1546), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/388 (74%), Positives = 328/388 (84%), Gaps = 3/388 (0%)

Query: 74  GKFGRFGGNYVPEILVACLRELETQFISALRDPLFQEELATALRDYVGRETPLYFAERLT 133
           GKFGRFGG +VPE L++ L ELE +F     D  FQEEL TALRDYVGRETPLYFAERLT
Sbjct: 70  GKFGRFGGKFVPETLMSRLIELEDEFNFVRCDHEFQEELTTALRDYVGRETPLYFAERLT 129

Query: 134 NHYKK---EDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSVVAATGAGQHGV 190
            HYK        GPEIYLKREDL+HCG+HK+NNA+AQAMI++R+G   VVAATGAGQHGV
Sbjct: 130 EHYKNIVPTIEGGPEIYLKREDLSHCGSHKINNALAQAMISRRLGCSRVVAATGAGQHGV 189

Query: 191 ATAAACAKLSLECTVLMGTTDMEKQSSNVLLMKLLGAQVKAVNGNFKDASSEAVREWVGN 250
           ATAAACAKLSLECTV MG  D+EKQS NVL MKLLGAQV +V G FKDASSEA+R WV N
Sbjct: 190 ATAAACAKLSLECTVFMGAADIEKQSFNVLSMKLLGAQVISVEGTFKDASSEAIRNWVEN 249

Query: 251 LETSYYLSGTAVGPHPCPTMVRQFQSVIGKEIRKQAMEKWGGKPDVLIACVGSGSNALGA 310
           L T+YYLSGT VGPHPCP +VR+FQSVIGKE R+QA + WGGKPDVL+ACVGSGSNALG 
Sbjct: 250 LYTTYYLSGTVVGPHPCPIIVREFQSVIGKETRRQAKQLWGGKPDVLVACVGSGSNALGL 309

Query: 311 FYEFIEDEDVRLIGVEAAGFGLDSGKHAATLAMGDVGVYHGAMSYLLQDEEGQILGPHSI 370
           F+EF+ DEDVRL+GVEAAG GLDSGKH+ATLA GDVGVYHG+MSYLLQD++GQIL PHS+
Sbjct: 310 FHEFVGDEDVRLVGVEAAGLGLDSGKHSATLAFGDVGVYHGSMSYLLQDDQGQILKPHSV 369

Query: 371 GVGLEYPGVSPELSLLKETKRAEFYSATDKEAVEAFKRLCKLEGIIPALEASHALAFLEK 430
           GVGLEYPGV PE+S +KET RAEFY+ATD+EA++A  RL +LEGIIPALEASHALAFL+K
Sbjct: 370 GVGLEYPGVGPEISFMKETGRAEFYTATDEEAIQACMRLSRLEGIIPALEASHALAFLDK 429

Query: 431 LCPTLPSGIKIIVNCSGVGDKDAATVLN 458
           L PTL  G K++VNCSG GDKD  T++ 
Sbjct: 430 LVPTLRDGAKVVVNCSGRGDKDLDTLIQ 457


>AT4G27070.1 | Symbols: TSB2 | TSB2 (TRYPTOPHAN SYNTHASE
           BETA-SUBUNIT 2); tryptophan synthase |
           chr4:13586564-13588619 FORWARD
          Length = 475

 Score =  565 bits (1456), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 258/389 (66%), Positives = 315/389 (80%), Gaps = 3/389 (0%)

Query: 74  GKFGRFGGNYVPEILVACLRELETQFISALRDPLFQEELATALRDYVGRETPLYFAERLT 133
           G+FG+FGG YVPE L+  L ELET F S   D  FQ ELA  L+DYVGRE+PLYFAERLT
Sbjct: 84  GRFGKFGGKYVPETLMHALSELETAFYSLATDEDFQRELAEILKDYVGRESPLYFAERLT 143

Query: 134 NHYKKEDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSVVAATGAGQHGVATA 193
            HY++E+G+GP IYLKREDLNH GAHK+NNA+AQA++AKR+G K ++A TGAGQHGVATA
Sbjct: 144 EHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATA 203

Query: 194 AACAKLSLECTVLMGTTDMEKQSSNVLLMKLLGAQVKAVN---GNFKDASSEAVREWVGN 250
             CA+  L+C + MG  DME+Q+ NV  M+LLGA+V+ V+      KDA+SEA+R+WV N
Sbjct: 204 TVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTN 263

Query: 251 LETSYYLSGTAVGPHPCPTMVRQFQSVIGKEIRKQAMEKWGGKPDVLIACVGSGSNALGA 310
           +ET++Y+ G+  GPHP P MVR F +VIGKE RKQAMEKWGGKPDVL+ACVG GSNA+G 
Sbjct: 264 VETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGL 323

Query: 311 FYEFIEDEDVRLIGVEAAGFGLDSGKHAATLAMGDVGVYHGAMSYLLQDEEGQILGPHSI 370
           F+EF++D +VR+IGVEAAGFGLDSGKHAATL  GDVGV HGAMSYLLQD++GQI+ PHSI
Sbjct: 324 FHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSI 383

Query: 371 GVGLEYPGVSPELSLLKETKRAEFYSATDKEAVEAFKRLCKLEGIIPALEASHALAFLEK 430
             GL+YPGV PE S LK+  RAE++S TD+EA+EAFKR+ +LEGIIPALE SHALA LEK
Sbjct: 384 SAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSHALAHLEK 443

Query: 431 LCPTLPSGIKIIVNCSGVGDKDAATVLNY 459
           LCPTLP G ++++N SG GDKD  T + Y
Sbjct: 444 LCPTLPDGARVVLNFSGRGDKDVQTAIKY 472


>AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPHAN
           SYNTHASE BETA-SUBUNIT 1); tryptophan synthase |
           chr5:22264805-22266738 REVERSE
          Length = 470

 Score =  557 bits (1436), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 256/389 (65%), Positives = 313/389 (80%), Gaps = 3/389 (0%)

Query: 74  GKFGRFGGNYVPEILVACLRELETQFISALRDPLFQEELATALRDYVGRETPLYFAERLT 133
           G+FG+FGG YVPE L+  L ELE+ F +   D  FQ ELA  L+DYVGRE+PLYFAERLT
Sbjct: 79  GRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLT 138

Query: 134 NHYKKEDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSVVAATGAGQHGVATA 193
            HY++E+G+GP IYLKREDLNH GAHK+NNA+AQA++AKR+G K ++A TGAGQHGVATA
Sbjct: 139 EHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATA 198

Query: 194 AACAKLSLECTVLMGTTDMEKQSSNVLLMKLLGAQVKAVN---GNFKDASSEAVREWVGN 250
             CA+  LEC + MG  DME+Q+ NV  M+LLGA+V+ V+      KDA+SEA+R+WV N
Sbjct: 199 TVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTN 258

Query: 251 LETSYYLSGTAVGPHPCPTMVRQFQSVIGKEIRKQAMEKWGGKPDVLIACVGSGSNALGA 310
           +ET++Y+ G+  GPHP P MVR F +VIGKE RKQA+EKWGGKPDVL+ACVG GSNA+G 
Sbjct: 259 VETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGL 318

Query: 311 FYEFIEDEDVRLIGVEAAGFGLDSGKHAATLAMGDVGVYHGAMSYLLQDEEGQILGPHSI 370
           F+EF+ D +VR+IGVEAAGFGLDSGKHAATL  GDVGV HGAMSYLLQD++GQI+ PHSI
Sbjct: 319 FHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSI 378

Query: 371 GVGLEYPGVSPELSLLKETKRAEFYSATDKEAVEAFKRLCKLEGIIPALEASHALAFLEK 430
             GL+YPGV PE S  K+  RAE+YS TD+EA+EAFKR+ +LEGIIPALE SHALA+LEK
Sbjct: 379 SAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEK 438

Query: 431 LCPTLPSGIKIIVNCSGVGDKDAATVLNY 459
           LCPTL  G ++++N SG GDKD  TV  Y
Sbjct: 439 LCPTLSDGTRVVLNFSGRGDKDVQTVAKY 467


>AT5G38530.1 | Symbols:  | tryptophan synthase-related |
           chr5:15424097-15426294 FORWARD
          Length = 506

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 141/330 (42%), Gaps = 42/330 (12%)

Query: 122 RETPLYFAERLTNHYKKEDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSVVA 181
           R TPL  A+RL    +        IY K E  +  G+HK N A+ QA    + G+K+VV 
Sbjct: 132 RPTPLIRAKRLEKLLQTPA----RIYFKYEGGSPAGSHKPNTAVPQAYYNAKEGVKNVVT 187

Query: 182 ATGAGQHGVATAAACAKLSLECTVLMGTTDMEKQSSNVLLMKLLGAQVKAVNGNFKDAS- 240
            TGAGQ G + A A +   L+C V         +    L+M+  GA+V     +  +A  
Sbjct: 188 ETGAGQWGSSLAFASSLFGLDCEVWQVANSYHTKPYRRLMMQTWGAKVHPSPSDLTEAGR 247

Query: 241 -----------------SEAVREWVGNLETSYYLSGTAVGPHPCPTMVRQFQSVIGKEIR 283
                            SEAV     N +T Y L             V   Q++IG+E  
Sbjct: 248 RILESDPSSPGSLGIAISEAVEVAARNEDTKYCLGSVL-------NHVLLHQTIIGEECI 300

Query: 284 KQAMEKWGGKPDVLIACVGSGSNALGAFYEFIEDE-----DVRLIGVE-AAGFGLDSGKH 337
           +Q ME +G  PD++I C G GSN  G  + FI ++     +  +  VE +A   L  G +
Sbjct: 301 QQ-MENFGETPDLIIGCTGGGSNFAGLSFPFIREKLKGKINPVIRAVEPSACPSLTKGVY 359

Query: 338 AATLAMGDVGVYHGAMSYLLQDEEGQILGPHSIGV-GLEYPGVSPELSLLKETKRAEFYS 396
           A      D G   G    +     G    P  I   GL Y G++P +S + E    E  S
Sbjct: 360 AY-----DFGDTAGLTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLISHVYEQGFMEAIS 414

Query: 397 ATDKEAVEAFKRLCKLEGIIPALEASHALA 426
               E  +   +  + EGIIPA E +HA+A
Sbjct: 415 IPQIECFQGAIQFARTEGIIPAPEPTHAIA 444