Jatropha Genome Database
- JcCA0020001.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0020001.10 + phase: 0 /pseudo/partial
(672 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G04885.1 | Symbols: PCFS4 | PCFS4 (PCF11P-SIMILAR PROTEIN 4);... 358 6e-99
AT1G66500.1 | Symbols: | zinc finger (C2H2-type) family protein... 164 1e-40
AT5G43620.1 | Symbols: | S-locus protein-related | chr5:1752265... 164 2e-40
AT2G36480.3 | Symbols: | zinc finger (C2H2-type) family protein... 121 2e-27
AT2G36480.2 | Symbols: | zinc finger (C2H2-type) family protein... 120 2e-27
AT2G36480.1 | Symbols: | zinc finger (C2H2-type) family protein... 120 2e-27
>AT4G04885.1 | Symbols: PCFS4 | PCFS4 (PCF11P-SIMILAR PROTEIN 4);
zinc ion binding | chr4:2472083-2475417 FORWARD
Length = 808
Score = 358 bits (919), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 164/203 (80%), Positives = 178/203 (87%)
Query: 433 APNQPPGSAFSGLIGSLMAQGLISLTKQTPGQDSVGLEFNADLIKVRHESAISALYADLP 492
A NQPPG AFSGLIGSLMAQGLISL Q GQ +GLEF+AD++K+R+ESAISALY DLP
Sbjct: 591 ASNQPPGGAFSGLIGSLMAQGLISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLP 650
Query: 493 RQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKHKPSRKWFVDTSMWLSGAEALGTDAV 552
RQCTTCGLRFKCQEEHS HMDWHVTKNRMSKN K PSRKWFV SMWLSGAEALG +AV
Sbjct: 651 RQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPSRKWFVSASMWLSGAEALGAEAV 710
Query: 553 PGFLPTESVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAVYMNAPNG 612
PGFLPTE EKKDDE+MAVPADE+Q +CALCGEPF+DFYSDETEEWMYKGAVYMNAP
Sbjct: 711 PGFLPTEPTTEKKDDEDMAVPADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEE 770
Query: 613 STAGMERSQLGPIVHAKCRSESS 635
ST M++SQLGPIVHAKCR ES+
Sbjct: 771 STTDMDKSQLGPIVHAKCRPESN 793
>AT1G66500.1 | Symbols: | zinc finger (C2H2-type) family protein |
chr1:24811262-24812512 REVERSE
Length = 416
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 110/185 (59%), Gaps = 22/185 (11%)
Query: 467 VGLEF-NADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKN- 524
VGL F N + VRHES I +LY+D+PRQC++CGLRFKCQEEHS HMDWHV KNR K
Sbjct: 227 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWHVRKNRSVKTT 286
Query: 525 ----RKHKPSRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDE--EMAVPADEEQ 578
++ K SR W S+WL A T V F + KD+E ++ VPADE+Q
Sbjct: 287 TRLGQQPKKSRGWLASASLWLCAATGGETVEVASFGGEMQKKKGKDEEPKQLMVPADEDQ 346
Query: 579 NACALCGEPFDDFYSDETEEWMYKGAVYMNAPNGSTAGMERSQLGPIVHAKCRSESSVAP 638
CALC EPF++F+S E ++WMYK AVY+ ++ G IVH KC E P
Sbjct: 347 KNCALCVEPFEEFFSHEDDDWMYKDAVYL------------TKNGRIVHVKCMPEPR--P 392
Query: 639 PEDFR 643
+D R
Sbjct: 393 AKDLR 397
>AT5G43620.1 | Symbols: | S-locus protein-related |
chr5:17522653-17523885 FORWARD
Length = 410
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 119/209 (56%), Gaps = 29/209 (13%)
Query: 448 SLMAQGLISLTKQTPGQDS--VGLEF-NADLIKVRHESAISALYADLPRQCTTCGLRFKC 504
SL+ T + DS VGL F N + VRHES I +LY+D+PRQCT+CG+RFKC
Sbjct: 199 SLLNNEKEKKTSEASNNDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCGVRFKC 258
Query: 505 QEEHSSHMDWHVTKNRMSKN-----RKHKPSRKWFVDTSMWLSGAEALGTDAVPGFLPTE 559
QEEHS HMDWHV KNR K ++ K SR W S+WL GT V F E
Sbjct: 259 QEEHSKHMDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWLCAPTGGGTVEVASFGGGE 318
Query: 560 SVVEKKDDEEMA-----VPADEEQNACALCGEPFDDFYSDETEEWMYKGAVYMNAPNGST 614
++KK++++ VPADE+Q CALC EPF++F+S E ++WMYK AVY+
Sbjct: 319 --MQKKNEKDQVQKQHMVPADEDQKNCALCVEPFEEFFSHEADDWMYKDAVYL------- 369
Query: 615 AGMERSQLGPIVHAKCRSESSVAPPEDFR 643
++ G IVH KC E P +D R
Sbjct: 370 -----TKNGRIVHVKCMPEPR--PAKDLR 391
>AT2G36480.3 | Symbols: | zinc finger (C2H2-type) family protein |
chr2:15302567-15306274 REVERSE
Length = 884
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 456 SLTKQTPGQDSVGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWH 515
S T ++ +D +GL+F AD I+ H S IS+L+ DLP CT+C +R K +EE HM+ H
Sbjct: 642 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 701
Query: 516 VTKNRMSKNRKHKPSRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDEEMAVPAD 575
K ++ + + R WF W++ A + P + S E ++ AV AD
Sbjct: 702 -DKKKLELSGTNSKCRVWFPKVDNWIA---AKAGELEPEYEEVLSEPESAIEDCQAVAAD 757
Query: 576 EEQNACALCGEPFDDFYSDETEEWMYKGAVYM-NAPNGSTAGMERSQLGPIVHAKCRSES 634
E Q AC LCGE F+D++S E +WM+KGA Y+ N P S A GPIVH C + S
Sbjct: 758 ETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS------GPIVHTGCLTTS 811
Query: 635 SV 636
S+
Sbjct: 812 SL 813
>AT2G36480.2 | Symbols: | zinc finger (C2H2-type) family protein |
chr2:15302567-15306274 REVERSE
Length = 842
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 456 SLTKQTPGQDSVGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWH 515
S T ++ +D +GL+F AD I+ H S IS+L+ DLP CT+C +R K +EE HM+ H
Sbjct: 642 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 701
Query: 516 VTKNRMSKNRKHKPSRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDEEMAVPAD 575
K ++ + + R WF W++ A + P + S E ++ AV AD
Sbjct: 702 -DKKKLELSGTNSKCRVWFPKVDNWIA---AKAGELEPEYEEVLSEPESAIEDCQAVAAD 757
Query: 576 EEQNACALCGEPFDDFYSDETEEWMYKGAVYM-NAPNGSTAGMERSQLGPIVHAKCRSES 634
E Q AC LCGE F+D++S E +WM+KGA Y+ N P S A GPIVH C + S
Sbjct: 758 ETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS------GPIVHTGCLTTS 811
Query: 635 SV 636
S+
Sbjct: 812 SL 813
>AT2G36480.1 | Symbols: | zinc finger (C2H2-type) family protein |
chr2:15303114-15306274 REVERSE
Length = 828
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 456 SLTKQTPGQDSVGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWH 515
S T ++ +D +GL+F AD I+ H S IS+L+ DLP CT+C +R K +EE HM+ H
Sbjct: 642 SETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH 701
Query: 516 VTKNRMSKNRKHKPSRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDEEMAVPAD 575
K ++ + + R WF W++ A + P + S E ++ AV AD
Sbjct: 702 -DKKKLELSGTNSKCRVWFPKVDNWIA---AKAGELEPEYEEVLSEPESAIEDCQAVAAD 757
Query: 576 EEQNACALCGEPFDDFYSDETEEWMYKGAVYM-NAPNGSTAGMERSQLGPIVHAKCRSES 634
E Q AC LCGE F+D++S E +WM+KGA Y+ N P S A GPIVH C + S
Sbjct: 758 ETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS------GPIVHTGCLTTS 811
Query: 635 SV 636
S+
Sbjct: 812 SL 813