Jatropha Genome Database

JcCA0019701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019701.10 + phase: 0 
         (139 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | GAMMA-H...   177   2e-45
AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | H2AXA; ...   176   4e-45
AT4G27230.1 | Symbols: HTA2 | HTA2 (histone H2A); DNA binding | ...   150   2e-37
AT5G54640.1 | Symbols: HTA1, RAT5 | RAT5 (RESISTANT TO AGROBACTE...   149   4e-37
AT1G51060.1 | Symbols: HTA10 | HTA10; DNA binding | chr1:1892694...   148   1e-36
AT3G20670.1 | Symbols: HTA13 | HTA13; DNA binding | chr3:7229472...   147   2e-36
AT5G59870.1 | Symbols: HTA6 | HTA6; DNA binding | chr5:24115605-...   125   6e-30
AT5G02560.1 | Symbols: HTA12 | HTA12; DNA binding | chr5:575437-...   123   4e-29
AT5G27670.1 | Symbols: HTA7 | HTA7 (HISTONE H2A 7); DNA binding ...   122   9e-29
AT1G52740.1 | Symbols: HTA9 | HTA9 (HISTONE H2A PROTEIN 9); DNA ...    84   3e-17
AT3G54560.1 | Symbols: HTA11 | HTA11; DNA binding | chr3:2019653...    82   1e-16
AT2G38810.2 | Symbols: HTA8 | HTA8 (HISTONE H2A 8); DNA binding ...    81   2e-16
AT2G38810.3 | Symbols: HTA8 | HTA8 (HISTONE H2A 8); DNA binding ...    81   2e-16
AT2G38810.1 | Symbols: HTA8 | HTA8 (HISTONE H2A 8); DNA binding ...    81   2e-16
AT4G13570.1 | Symbols: HTA4 | HTA4; DNA binding | chr4:7884516-7...    53   6e-08

>AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | GAMMA-H2AX
           (GAMMA HISTONE VARIANT H2AX); DNA binding |
           chr1:20414607-20415206 REVERSE
          Length = 142

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 92/114 (80%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 29  AGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVP 88

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGDIGSASQEF 139
           RHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK KGDIGSASQEF
Sbjct: 89  RHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142


>AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | H2AXA; DNA
           binding | chr1:2847144-2847676 REVERSE
          Length = 142

 Score =  176 bits (446), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 92/114 (80%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLK+GKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 29  AGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVP 88

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGKGDIGSASQEF 139
           RHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK KGDIGSASQEF
Sbjct: 89  RHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142


>AT4G27230.1 | Symbols: HTA2 | HTA2 (histone H2A); DNA binding |
           chr4:13637515-13638325 REVERSE
          Length = 131

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 79/104 (75%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 23  AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGK 129
           RHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126


>AT5G54640.1 | Symbols: HTA1, RAT5 | RAT5 (RESISTANT TO
           AGROBACTERIUM TRANSFORMATION 5); DNA binding |
           chr5:22196540-22197279 FORWARD
          Length = 130

 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 79/104 (75%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 23  AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGK 129
           RHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126


>AT1G51060.1 | Symbols: HTA10 | HTA10; DNA binding |
           chr1:18926948-18927443 FORWARD
          Length = 132

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 78/104 (75%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLK GKYA+RVGAGAP                  GNAARDNKK RIVP
Sbjct: 23  AGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGK 129
           RHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126


>AT3G20670.1 | Symbols: HTA13 | HTA13; DNA binding |
           chr3:7229472-7229963 FORWARD
          Length = 132

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 77/104 (74%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIARFLK GKYA RVGAGAP                  GNAARDNKK RIVP
Sbjct: 23  AGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKGK 129
           RHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126


>AT5G59870.1 | Symbols: HTA6 | HTA6; DNA binding |
           chr5:24115605-24116144 REVERSE
          Length = 150

 Score =  125 bits (315), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 71/99 (71%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRI RFLK G+YA R+G GAP                  GNAARDNKK+RI+P
Sbjct: 31  AGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIP 90

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKK 124
           RH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct: 91  RHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129


>AT5G02560.1 | Symbols: HTA12 | HTA12; DNA binding |
           chr5:575437-576456 FORWARD
          Length = 153

 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 71/103 (68%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           +GLQFPVGRI R+LK G+Y+ RVG GAP                  GNAARDNKKNRI+P
Sbjct: 31  SGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIP 90

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKMGKG 128
           RH+ LAVRNDEEL  LL  VTIA+GGVLPNI+  LLPKK  K 
Sbjct: 91  RHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKA 133


>AT5G27670.1 | Symbols: HTA7 | HTA7 (HISTONE H2A 7); DNA binding |
           chr5:9792807-9793365 REVERSE
          Length = 150

 Score =  122 bits (305), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 71/99 (71%)

Query: 26  AGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           AGLQFPVGRIAR+LK G+YA R G+GAP                  GNAARDNKKNRI P
Sbjct: 32  AGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINP 91

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKK 124
           RH+ LA+RNDEEL +LL  VTIA+GGVLPNI+  LLPKK
Sbjct: 92  RHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130


>AT1G52740.1 | Symbols: HTA9 | HTA9 (HISTONE H2A PROTEIN 9); DNA
           binding | chr1:19645409-19646221 FORWARD
          Length = 134

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AGLQFPVGR+ R LK    A  RVGA A                   GNA++D K  RI 
Sbjct: 33  AGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRIS 92

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 93  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 130


>AT3G54560.1 | Symbols: HTA11 | HTA11; DNA binding |
           chr3:20196532-20197466 FORWARD
          Length = 136

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AG+QFPVGRI R LK    A  RVGA A                   GNA++D K  RI 
Sbjct: 35  AGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRIT 94

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 95  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 132


>AT2G38810.2 | Symbols: HTA8 | HTA8 (HISTONE H2A 8); DNA binding |
           chr2:16219444-16220679 REVERSE
          Length = 136

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AG+QFPVGRI R LK    A  RVGA A                   GNA++D K  RI 
Sbjct: 35  AGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRIT 94

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 95  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132


>AT2G38810.3 | Symbols: HTA8 | HTA8 (HISTONE H2A 8); DNA binding |
           chr2:16219444-16220679 REVERSE
          Length = 136

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AG+QFPVGRI R LK    A  RVGA A                   GNA++D K  RI 
Sbjct: 35  AGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRIT 94

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 95  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132


>AT2G38810.1 | Symbols: HTA8 | HTA8 (HISTONE H2A 8); DNA binding |
           chr2:16219444-16220679 REVERSE
          Length = 136

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 26  AGLQFPVGRIARFLKAGKYAD-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIV 84
           AG+QFPVGRI R LK    A  RVGA A                   GNA++D K  RI 
Sbjct: 35  AGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRIT 94

Query: 85  PRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPK 123
           PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct: 95  PRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132


>AT4G13570.1 | Symbols: HTA4 | HTA4; DNA binding |
           chr4:7884516-7885664 FORWARD
          Length = 118

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 27  GLQFPVGRIARFLKAGKYA-DRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVP 85
           G  F V RI + LK    A   VGA                      N ++D K  RI P
Sbjct: 28  GEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITP 87

Query: 86  RHIQLAVRNDEELSKLLGTVTIANGGVLPNIH 117
           RH+QLA+R DEEL  L+   TI  G V+P+IH
Sbjct: 88  RHLQLAIRGDEELDTLIKG-TIIGGSVIPHIH 118