Jatropha Genome Database

JcCA0019191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019191.20 - phase: 0 /partial
         (153 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31220.1 | Symbols:  | phosphoribosylglycinamide formyltransf...   203   4e-53
AT4G17360.1 | Symbols:  | formyltetrahydrofolate deformylase/ hy...    64   4e-11
AT5G47435.1 | Symbols:  | formyltetrahydrofolate deformylase, pu...    63   7e-11
AT5G47435.2 | Symbols:  | formyltetrahydrofolate deformylase, pu...    63   7e-11

>AT1G31220.1 | Symbols:  | phosphoribosylglycinamide
           formyltransferase | chr1:11157064-11158408 FORWARD
          Length = 292

 Score =  203 bits (516), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 114/142 (80%)

Query: 11  VVLIREFEVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIA 70
           V ++R++ VDF+LLAGYLKLIP ELVQA+PKRILNIHPALLPAFGGKG YG+KVHKAV+ 
Sbjct: 150 VDVLRKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALLPAFGGKGLYGIKVHKAVLE 209

Query: 71  SGARYSGPTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCE 130
           SGARYSGPTIHFV+E YDTG I+AQ  V V+ANDT               YVEV  A+CE
Sbjct: 210 SGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTPEELAKRVLHEEHKLYVEVVGAICE 269

Query: 131 ERIIWREDGVPLIRSRENPNQY 152
           ERI WREDGVPLI++++NP++Y
Sbjct: 270 ERIKWREDGVPLIQNKQNPDEY 291


>AT4G17360.1 | Symbols:  | formyltetrahydrofolate deformylase/
           hydroxymethyl-, formyl- and related transferase/
           methyltransferase | chr4:9703698-9705468 REVERSE
          Length = 328

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 19  VDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIASGARYSGP 78
            DF++LA Y++L+    ++ Y K ++NIH  LLP+F G+        K    +G +  G 
Sbjct: 208 TDFLVLARYMQLLSGNFLKGYGKDVINIHHGLLPSFKGRNPV-----KQAFDAGVKLIGA 262

Query: 79  TIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCEERII 134
           T HFV E  D+G II Q V  V   D                 ++   + CE R++
Sbjct: 263 TTHFVTEELDSGPIIEQMVERVSHRDNLRSFVQKSEDLEKKCLMKAIKSYCELRVL 318


>AT5G47435.1 | Symbols:  | formyltetrahydrofolate deformylase,
           putative | chr5:19241779-19243424 FORWARD
          Length = 323

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 18  EVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIASGARYSG 77
           + DF++LA Y++++    ++ Y K ++NIH  LLP+F G GY      K    +G +  G
Sbjct: 202 DTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKG-GYPA----KQAFDAGVKLIG 256

Query: 78  PTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCEERII 134
            T HFV E  D+G II Q V  V   D                      + CE R++
Sbjct: 257 ATSHFVTEELDSGPIIEQMVESVSHRDNLRSFVQKSEDLEKKCLTRAIKSYCELRVL 313


>AT5G47435.2 | Symbols:  | formyltetrahydrofolate deformylase,
           putative | chr5:19241779-19243424 FORWARD
          Length = 323

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 18  EVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIASGARYSG 77
           + DF++LA Y++++    ++ Y K ++NIH  LLP+F G GY      K    +G +  G
Sbjct: 202 DTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKG-GYPA----KQAFDAGVKLIG 256

Query: 78  PTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCEERII 134
            T HFV E  D+G II Q V  V   D                      + CE R++
Sbjct: 257 ATSHFVTEELDSGPIIEQMVESVSHRDNLRSFVQKSEDLEKKCLTRAIKSYCELRVL 313