Jatropha Genome Database

JcCA0013701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0013701.10 + phase: 0 /pseudo/partial
         (274 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17410.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...    99   2e-21
AT1G76510.2 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...    89   2e-18
AT1G76510.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...    89   2e-18
AT1G20910.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...    89   3e-18

>AT2G17410.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr2:7559869-7563474 FORWARD
          Length = 786

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 50/64 (78%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVR 60
           VT  KLWRQVGESF PPKTCTTVSWTFR FYEKALLEYE+HKV  GEL  P     EP+ 
Sbjct: 543 VTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLELEPMN 602

Query: 61  VENQ 64
           ++NQ
Sbjct: 603 IDNQ 606


>AT1G76510.2 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr1:28708927-28712498 REVERSE
          Length = 434

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEP 58
           VT+ KLWRQVGESF+PPKTCTTVSWTFR FYEKALLEYEKH  + GEL  P GS + P
Sbjct: 191 VTTSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNLP-GSASLP 247


>AT1G76510.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr1:28708927-28712498 REVERSE
          Length = 434

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEP 58
           VT+ KLWRQVGESF+PPKTCTTVSWTFR FYEKALLEYEKH  + GEL  P GS + P
Sbjct: 191 VTTSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNLP-GSASLP 247


>AT1G20910.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr1:7277209-7280635 REVERSE
          Length = 398

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 45/55 (81%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSL 55
           VT+ KLWRQVGESFNPPKTCTTVS+TFRNFYEKALLEYEK     GEL  P  +L
Sbjct: 155 VTTNKLWRQVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTL 209